List of software/websites/databases/other stuff for genome engineering
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Jul 29, 2026
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#
crispr
Here are 282 public repositories matching this topic...
Single-cell perturbation analysis
python bioinformatics computational-biology drug-discovery scrna-seq crispr single-cell differential-expression perturbation anndata scverse differential-abundance perturb-seq
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Sep 2, 2026 - Python
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
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May 17, 2019 - Python
Cutting-edge Full-stack AI Platform delivered as a SaaS (Software as a Service). Built on a robust technology stack, integrated with powerful APIs such as OpenAI and Replicate, offers a seamless experience for code generation, conversation simulation, image creation, music composition, and video generation.
react typescript stripe nextjs postgresql axios openai crispr replicate prisma react-markdown tailwindcss zod react-hook-form zustand supabase clerk react-hot-toast shadcn-ui
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Sep 4, 2026 - TypeScript
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
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Aug 28, 2026 - Python
FlashFry: The rapid CRISPR target site characterization tool
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Jul 27, 2026 - Scala
Synthego ICE - Inference of CRISPR Editing software
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Apr 13, 2026 - Python
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
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Sep 1, 2026 - Nextflow
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
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May 8, 2024 - C
An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive workspace.
bioinformatics mcp synthetic-biology computational-biology genbank crispr pcr plasmid molecular-biology sequence-alignment ai-agents claude primer-design sequence-analysis multiple-sequence-alignment bioinformatics-tool sanger-sequencing model-context-protocol mcp-app claude-science
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Sep 6, 2026 - TypeScript
Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
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Jul 29, 2025 - Python
Predicting Cell Health with Morphological Profiles
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Jan 26, 2022 - HTML
A better, faster way to count guides in CRISPR screens.
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Apr 30, 2026 - Rust
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
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Feb 22, 2018 - Python
Flexible analysis of high-content CRISPR screening
crispr-analysis crispr phenotypes crispr-cas9 functional-genomics ngs-analysis perturbation-screen sequencing-data crispr-cas12
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Mar 6, 2026 - Python
Comprehensive design of CRISPR gRNAs for nucleases and base editors
bioconductor crispr crispr-target crispr-cas9 grna grna-sequence bioconductor-package sgrna crispr-design sgrna-design grna-sequences genomics-analysis
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Aug 13, 2026 - HTML
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
genomics bioconductor crispr crispr-target crispr-cas9 grna grna-sequence bioconductor-package scoring-algorithm sgrna crispr-design sgrna-design grna-sequences
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Apr 2, 2026 - Python
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