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1. PertEval PertEval Public

   Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.

   Python 41 8

2. pinellolab/DNA-Diffusion pinellolab/DNA-Diffusion Public

   🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨

   Python 488 61

3. geneius geneius Public

   Geneius is a powerful command-line tool leveraging Anthropic AI's Claude API to help you search through scientific literature and extract evidence for disease-gene associations.

   Python 4

4. cfrnet-reproduction cfrnet-reproduction Public

   Reproducing Shalit et al.'s Individual Treatment Effect model. This is a deep neural net that can be applied to various problems in causal inference.

   Python 19 5