Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Personal Cancer Genome Reporter (PCGR)

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes

This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)

Turn your iPhone into a somatic intelligence layer — 8 sensors, fully local.

Empirical Bayes somatic variant calling

Reproducible Nextflow DSL2 pipeline for short-read human WGS, supporting germline and matched tumor-normal variant calling, benchmarking, SV/CNV analysis, QC, reporting, and provenance.