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This repo contains the .NET Core runtime, called CoreCLR, and the base library, called mscorlib. It includes the garbage collector, JIT compiler, base .NET data types and many low-level classes.
This repo contains the .NET Core foundational libraries, called CoreFX. It includes classes for collections, file systems, console, XML, async and many others.
The DNX (a .NET Execution Environment) contains the code required to bootstrap and run an application, including the compilation system, SDK tools, and the native CLR hosts.
This repo contains the .NET Core command-line (CLI) tools, used for building .NET Core apps and libraries through your development flow (compiling, NuGet package management, running, testing, ...).