Pull requests

• build(deps): bump multidict from 6.7.1 to 6.9.1 in /requirements

  dependenciespython
  #2269·dependabot[bot] opened Oct 20, 2026Bot·

  ·

• build(deps): bump urllib3 from 2.7.0 to 2.8.0 in /starfish

  dependenciespython
  #2268·dependabot[bot] opened Oct 20, 2026Bot·

  ·

• build(deps): bump aiohttp from 3.14.1 to 3.14.4 in /requirements

  dependenciespython
  #2267·dependabot[bot] opened Oct 20, 2026Bot·

  ·

• build(deps): bump notebook from 7.6.0 to 7.6.3 in /requirements

  dependenciespython
  #2266·dependabot[bot] opened Oct 8, 2026Bot·

  ·

• build(deps): bump jupyterlab from 4.5.7 to 4.5.11 in /requirements

  dependenciespython
  #2265·dependabot[bot] opened Oct 8, 2026Bot·

  ·

• build(deps): bump the patch group across 1 directory with 17 updates

  dependenciespython
  #2264·dependabot[bot] opened Oct 1, 2026Bot·

  ·

• build(deps): bump anyio from 4.12.1 to 4.14.2 in /requirements

  dependenciespython
  #2263·dependabot[bot] opened Sep 19, 2026Bot·

  ·

• build(deps): bump soupsieve from 2.8.4 to 2.9 in /requirements

  dependenciespython
  #2262·dependabot[bot] opened Sep 18, 2026Bot·

  ·

• build(deps): bump tornado from 6.5.7 to 6.5.8 in /requirements

  dependenciespython
  #2261·dependabot[bot] opened Sep 1, 2026Bot·

  ·

• build(deps): bump github/codeql-action from 4 to 4.37.3

  dependenciesgithub_actions
  #2254·dependabot[bot] opened Aug 1, 2026Bot·

  ·

• Multi barcode decoder

  #2235·Sandmann476 opened Jun 8, 2026·

  ·
  1

• Bump docutils from 0.19 to 0.23

  dependenciespython
  #2233·dependabot[bot] opened Jun 2, 2026Bot·

  ·

• Bump nbconvert from 6.5.4 to 7.17.1 in /requirements

  dependenciespython
  #2218·dependabot[bot] opened Apr 21, 2026Bot·

  ·

• Bump alabaster from 0.7.16 to 1.0.0

  dependenciespython
  #2198·dependabot[bot] opened Mar 1, 2026Bot·

  ·

• Add new GitHub Actions workflow for Copilot environment setup

  bug
  #2194·shachafl opened Feb 25, 2026Collaborator·

  ·
  

• Bump mistune from 0.8.4 to 2.0.3 in /requirements

  dependencies
  #1987·dependabot[bot] opened Jul 29, 2022Bot·

  ·

• change Codebook data default dtype to float

  #1975·berl opened Mar 16, 2022Collaborator·

  ·

• SpotFindingResults Serialization to Disk (and loading)

  #1961·ctcisar opened Oct 13, 2021·

  ·
  8

• adds napari screenshot to quickstart

  #1910·neuromusic opened Aug 26, 2020Collaborator·

  ·
  3

• RNAscope HiPlex Pipeline Example

  #1909·mattcai opened Jul 30, 2020Contributor·

  ·

• Add method runtime parameters to logging

  #1685·shanaxel42 opened Dec 4, 2019Collaborator·

  ·
  1

  3

• 9.) graph based decoding

  #1613·shanaxel42 opened Oct 15, 2019Collaborator·

  ·

  · 0.2.0
  9

• Graph based decoding initial commit

  #1482·gapartel opened Aug 5, 2019·

  ·
  12