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Commits on Dec 2, 2023

• Merge pull request #193 from pontushojer/warn-missing-samples

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  ryanlayer

  authored
  dfc8609

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Commits on Nov 27, 2023

• warn if missing samples in BAMs or VCF

  pontushojer

  committed
  b0e450a

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Commits on Nov 24, 2023

• enable dysgu translocations

  pontushojer

  authored
  ef7a294

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Commits on Nov 22, 2023

• fix bug where 2nd breakpoint position not in INFO/END for interchromosomal translocations

  pontushojer

  authored
  55a85fb

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Commits on Nov 20, 2023

• fix missing space in template for translocations

  pontushojer

  authored
  b3a2f7a

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Commits on Nov 13, 2023

• Add parenthesis

  pontushojer

  authored
  2633777

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Commits on Nov 10, 2023

• fix translocation handling and add log messages

  pontushojer

  authored
  ccefb81

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Commits on May 15, 2023

• add info about how many variants are filtered out.

  pontushojer

  committed
  ceb48c6

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• fix string formatting

  pontushojer

  committed
  80b4f2f

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• Exit if no samples in VCF match sample in BAMs or those specified using `--sample_ids`.

  pontushojer

  committed
  12aad6f

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• use logger for messages

  pontushojer

  committed
  4a5505f

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Commits on Feb 25, 2022

• Merge pull request #150 from pontushojer/vcf-multithread

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  mchowdh200

  authored
  4ac4ce0

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Commits on Feb 15, 2022

• Enable multithread plotting from VCF

  pontushojer

  committed
  152031a

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• Enable plot generation without using subprocess

  pontushojer

  committed
  b96a1f9

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Commits on Feb 14, 2022

• Remove unused functions identified with (vulture)[https://github.com/jendrikseipp/vulture]

  pontushojer

  committed
  b7f650a

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Commits on Jun 18, 2021

• Allow manual scaling of annotation track size and other fixes (#141)

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  jbelyeu

  authored
  a1c1342

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Commits on Jan 9, 2021

• removed unset FORMAT fields and changed gff to gff3 explicitly

  jbelyeu

  committed
  eadc093

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Commits on Jan 8, 2021

• removes get_overlap bug

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  Joe Brown

  committed
  3ecad66

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Commits on Jan 7, 2021

• fixed bug in control-sample truncation

  jbelyeu

  committed
  81e9b60

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Commits on Oct 20, 2020

• bugfixes for errors in vcf with translocations and CIs

  jbelyeu

  committed
  3501f14

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Commits on Aug 10, 2020

• fixed bug in translocation case samplot vcf

  jbelyeu

  committed
  650736b

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Commits on Aug 7, 2020

• added support for bnds in samplot vcf

  jbelyeu

  committed
  ebf1300

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Commits on Aug 4, 2020

• added debug option

  jbelyeu

  committed
  b16eafc

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Commits on Jun 1, 2020

• removed minq from samplot_vcf

  jbelyeu

  committed
  40c9c1b

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Commits on Mar 24, 2020

• linted and removed unused vars

  jbelyeu

  committed
  2c21bd6

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• added min window size

  jbelyeu

  committed
  6057299

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Commits on Feb 4, 2020

• fixed params issue, template install problem

  jbelyeu

  committed
  b58c91c

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• Updates `samplot vcf` (#19)

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  Joe Brown

  authored
  0aa03b6

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