schandy2211 (Sruthy K. Chandy) · GitHub
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schandy2211/README.md

👋 Hi, I’m Sruthy Chandy

🎓 Postdoctoral Scholar @ UC Berkeley & Lawrence Berkeley National Lab with Teresa Head-Gordon || Ph.D. @ Indiana University Bloomington with Krishnan Raghavachari 🧪 Computational Chemist | ML Scientist | Quantum Modeler
📍 Based in Berkeley, CA | Open to Industry Roles (ML × Chemistry × AI4Science)


🔬 My Work in One Line

I build machine learning models that match quantum chemistry accuracy — for real-world molecular systems, catalysis, interfacial environments, and biomolecules.


🚀 Current Highlights

  • 🔍 Developed hybrid ML–DFT model for water-ion and water–metal oxide systems
  • 🧠 Designed delta-learning force field for many-body PES of water clusters
  • ⚛️ Led NMR chemical shift prediction project for Proteins and Nucleic Acids combining fragment based quantum chemistry and machine learning (PCCP 2020, JCTC 2023 Jan, JCTC 2023 May – MIM-ML)
  • 📈 Published in JACS, Inorg Chem, JCTC; CO₂RR and NRR mechanisms
  • 🧪 Simulations: AIMD (CP2K), DFT (Q-Chem, Gaussian, ORCA), force fields (OpenMM/AMOEBA)

🧠 Tools & Skills

  • Languages: Python, Fortran, Bash
  • Libraries: PyTorch, scikit-learn, NumPy, pandas
  • Chemistry: CP2K, ORCA, Q-Chem, Gaussian, xTB, CREST, OpenMM, AMBER
  • ML Chemistry: Delta learning, Deep Learning, many-body energy decomposition
  • Extras: Git, Jupyter, GitHub Actions

📂 Featured Projects

🔗 MIM-ML
Predict NMR shifts of nucleic acids using fragment-based quantum descriptors + random forest; experimental accuracy at GFN2-xTB cost

🔗 Delta-learning-force
Learn energy corrections for 2-body water-ion clusters via feedforward NN (in progress)

🔗 SCALE
AI-assisted agentic molecular optimization workflow integrating chemical reasoning and data-driven scoring functions

🔗 Or56a Analysis
Mechanistic model of odorant antagonism via AlphaFold + docking + pocket detection


🧾 Reach Me

📧 schandy@berkeley.edu | skchandy@lbl.gov 🔗 LinkedIn

Pinned Loading

  1. scale scale Public

    Python 2

  2. MIM_ML MIM_ML Public

    MIM-ML: A Novel Quantum Chemical Fragment-Based Random Forest Model for Accurate Prediction of NMR Chemical Shifts of Nucleic Acids

    Python 2

  3. CMM_Delta_ML CMM_Delta_ML Public

  4. or56a-analysis or56a-analysis Public

    Mechanistic analysis of odorant antagonism in Drosophila Or56a via docking & structural modeling

    Jupyter Notebook

  5. xyz2mol xyz2mol Public

    Forked from jensengroup/xyz2mol

    Converts an xyz file to an RDKit mol object

    Python