saketkc (Saket Choudhary) · GitHub
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@oerpub @wysiwhat @biojs @conda-forge @bioconda

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  1. pysradb pysradb Public

    Package for fetching metadata and downloading data from SRA/ENA/GEO

    Python 354 65

  2. covmuller covmuller Public

    Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID

    R 4

  3. pySCTransform pySCTransform Public

    Python package to perform normalization and variance-stabilization of single-cell data

    Jupyter Notebook 28 13

  4. blog blog Public

    Jupyter Notebook 3

  5. gencode_regions gencode_regions Public

    Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

    Jupyter Notebook 118 51

  6. smithlabcode/ribotricer smithlabcode/ribotricer Public

    A tool for accurately detecting actively translating ORFs from Ribo-seq data

    Python 41 9