rpetit3 (Robert A. Petit III) · GitHub
Skip to content
View rpetit3's full-sized avatar
🦬
Yo!
🦬
Yo!
314 followers · 194 following

Achievements

Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@staphopia @Read-Lab-Confederation @conda-forge @bioconda @MetaSUB @bactopia

Block or report rpetit3

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Content in all repositories owned by your account will be closed.
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
rpetit3/README.md

Yo! 👋

Hello, I'm Robert Petit (puh-teet, not pet-it)! I currently work as a bioinformatician in the Wyoming Public Health Laboratory. In my personal time I am continuing to develop Bactopia, a bacterial genome analysis pipeline.

  • 💻 Things I use daily: Nextflow, Conda, Unix, Python
  • 💬 Ask me about: Bactopia and Bioconda
  • ⚡ Fun fact: I'm the third Robert, in a line of Bobs
  • 🔥 Hot take: Pecan is pronounced PEE-CAN!

Pinned Loading

  1. bactopia/bactopia bactopia/bactopia Public

    A flexible pipeline for complete analysis of bacterial genomes

    Nextflow 523 81

  2. camlhmp camlhmp Public

    🐪Classification through yAML Heuristic Mapping Protocol 🐪

    Python 10 2

  3. dragonflye dragonflye Public

    🐉 🪰 Assemble bacterial isolate genomes from Nanopore reads

    Perl 136 13

  4. fastq-dl fastq-dl Public

    Download FASTQ files from SRA or ENA repositories.

    Python 404 32

  5. fastq-scan fastq-scan Public

    Output FASTQ summary statistics in JSON format

    C++ 29 2

  6. sccmec sccmec Public

    A tool for typing SCCmec cassettes in assemblies

    Python 13