oschwengers (Oliver Schwengers) · GitHub
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🦠
deciphering microbial genomes
🦠
deciphering microbial genomes
210 followers · 77 following

Achievements

Achievement: Starstruckx3Achievement: YOLOAchievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Starstruckx3Achievement: YOLOAchievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Organizations

@ag-computational-bio

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oschwengers/README.md

Hi 👋

I'm a bioinformatician and PostDoc working in the field of microbial genomics. Besides hands-on analyses of WGS data, I'm especially interested in the development of bioinformatics methodologies & software tools for the analysis of bacterial WGS data with a special turn towards plasmids.

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  1. bakta bakta Public

    Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

    Python 679 86

  2. platon platon Public

    Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

    Python 130 16

  3. referenceseeker referenceseeker Public

    Rapid determination of appropriate reference genomes.

    Python 104 8

  4. asap asap Public

    A scalable bacterial genome assembly, annotation and analysis pipeline

    Groovy 79 20