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scgpt_finetuned runs out of memory on a 16 GB GPU, with no knob to turn

bugSomething isn't workingSomething isn't working

Status: Open.

#111 In openproblems-bio/task_batch_integration;

· rcannood opened on Aug 21, 2026

Migrate geneformer to the V2 104M model

enhancementNew feature or requestNew feature or request

Status: Open.

#110 In openproblems-bio/task_batch_integration;

· rcannood opened on Aug 21, 2026

Triage of the 2026-08-17 full run: 263 failed tasks, kbet_pg and 5 methods produced nothing

bugSomething isn't workingSomething isn't working

Status: Open.

#105 In openproblems-bio/task_batch_integration;

· rcannood opened on Aug 20, 2026

Question: How often are Benchmarking results updated?

Status: Open.

#93 In openproblems-bio/task_batch_integration;

· JGarnica22 opened on Nov 19, 2025

issue link on website for batch integration is wrong

Status: Open.

#92 In openproblems-bio/task_batch_integration;

· KaiWaldrant opened on Nov 10, 2025

Setting up new component with appropriate defaults

enhancementNew feature or requestNew feature or request

Status: Open.

#82 In openproblems-bio/task_batch_integration;

· mumichae opened on Aug 29, 2025

Inconsistent preprocessing for scPRINT

bugSomething isn't workingSomething isn't working

Status: Open.

#81 In openproblems-bio/task_batch_integration;

· mumichae opened on Aug 29, 2025

Split scanorama into two components

Status: Open.

Task

#80 In openproblems-bio/task_batch_integration;

· lazappi opened on Aug 29, 2025

Representative Housekeeping Gene-based Method

enhancementNew feature or requestNew feature or request

Status: Open.

#48 In openproblems-bio/task_batch_integration;

· DarioS opened on Feb 5, 2025

Review results

Status: Open.

#47 In openproblems-bio/task_batch_integration;

· rcannood opened on Jan 24, 2025

Add a negative control returning a feature matrix

Status: Open.

#46 In openproblems-bio/task_batch_integration;

· rcannood opened on Jan 24, 2025

Add scFoundation/CellPLM

enhancementNew feature or requestNew feature or request

Status: Open.

#15 In openproblems-bio/task_batch_integration;

· HelloWorldLTY opened on Dec 6, 2024