joshuaowalker (Josh Walker) · GitHub
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Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx2

Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx2

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  1. specimux specimux Public

    High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.

    Python 8

  2. adjusted-identity adjusted-identity Public

    Calculates adjusted identity scores for DNA sequences a la MycoBLAST

    Python 1

  3. gaphack gaphack Public

    A gap-optimized hierarchical agglomerative clustering tool for DNA barcode-based species (OTU) delimitation that attempts to maximize the barcode gap between clusters.

    Python 2

  4. speconsense speconsense Public

    Specimen sequence read clustering and consensus generation

    Python 3

  5. pyitsx pyitsx Public

    Fast ITS region detection and extraction for Python, powered by in-process HMM search via pyhmmer

    Python

  6. specimux-suite specimux-suite Public

    An event-sourced pipeline for demultiplexing, consensus calling, and taxonomic identification of nanopore amplicon sequencing runs, with a real-time web dashboard.

    Python 1