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Li Ding's Lab

Li Ding's Lab at the Washington University School of Medicine

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  1. msisensor msisensor Public archive

    microsatellite instability detection using tumor only or paired tumor-normal data

    C++ 134 55

  2. CharGer CharGer Public

    Characterization of Germline variants

    Python 102 37

  3. MuSiC2 MuSiC2 Public

    identifying mutational significance in cancer genomes

    Perl 61 20

  4. hotspot3d hotspot3d Public

    3D hotspot mutation proximity analysis tool

    Perl 53 26

  5. PanCanAtlasGermline PanCanAtlasGermline Public

    R 44 14

  6. PanCan_snATAC_publication PanCan_snATAC_publication Public

    Jupyter Notebook 22 5

Repositories

Showing 10 of 149 repositories
  • somaticwrapper Public

    Detect somatic variants from tumor and normal WGS/WXS data

    ding-lab/somaticwrapper's past year of commit activity
    Perl 21 AGPL-3.0 9 1 0 Updated Sep 3, 2026
  • FSAudit Public

    Filesystem audit visualization

    ding-lab/FSAudit's past year of commit activity
    Shell 1 0 0 0 Updated Aug 27, 2026
  • rcwrapper Public

    calculate vaf for variants based on bam

    ding-lab/rcwrapper's past year of commit activity
    Perl 0 0 0 0 Updated Aug 27, 2026
  • mCRC_publication Public
    ding-lab/mCRC_publication's past year of commit activity
    R 1 0 0 0 Updated Aug 22, 2026
  • G4X_viewer Public
    ding-lab/G4X_viewer's past year of commit activity
    Dockerfile 0 0 0 0 Updated Aug 17, 2026
  • IRD Public
    ding-lab/IRD's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 11, 2026
  • NephroGrad Public
    ding-lab/NephroGrad's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 9, 2026
  • SVantage-DL Public

    Deep learning pipeline for SV detection and coarse breakpoint localization

    ding-lab/SVantage-DL's past year of commit activity
    Python 0 0 0 0 Updated Jun 26, 2026
  • SVantage Public

    Pipeline for SR-LR integration

    ding-lab/SVantage's past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Jun 21, 2026
  • importGDC Public

    Automated download of CPTAC3 data from GDC

    ding-lab/importGDC's past year of commit activity
    Shell 2 0 0 0 Updated Jun 19, 2026
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