Issues

• [BUG] nmslib can support dense matrix, but when use dense matrix it will auto convert csr_matrix

  davisidarta/topometry#27 · Filter by author falsetry1514 opened on Mar 29, 2026

• Is IsUMap being considered as a potential addition? It seems promising

  davisidarta/topometry#25 · Filter by author falsetry1514 opened on Mar 1, 2026

• ValueError Raised During TSNE Projection

  davisidarta/topometry#19 · Filter by author droully opened on Aug 30, 2024

• eval_models_layouts throws an error for sparse csr_matrix

  davisidarta/topometry#18 · Filter by author sciwithrach opened on May 20, 2024

• trustworthiness function missing

  davisidarta/topometry#17 · Filter by author daniel-spies opened on Mar 11, 2024

• library integration

  davisidarta/topometry#16 · Filter by author jdmontenegro opened on Dec 19, 2023

• Map projection looks odd with high number of cells

  davisidarta/topometry#15 · Filter by author Marwansha opened on Dec 12, 2023
  1

• comparing classic umap and topometry

  question
  davisidarta/topometry#14 · Filter by author Marwansha opened on Dec 7, 2023
  2

  

• paCMAP generate an error ,

  bug
  davisidarta/topometry#13 · Filter by author Marwansha opened on Dec 7, 2023
  1

  

• Evaluating embedding based on how good the embedding explains a continuous/binary column

  davisidarta/topometry#9 · Filter by author hoangthienan95 opened on Apr 10, 2022

• When to consider using TopOMetry over UMAP?

  documentationquestion
  davisidarta/topometry#8 · Filter by author sgbaird opened on Mar 18, 2022 · update docs
  2