Sunbelt Computer Software

PL/B Language Development and Support

History for Bio/Data - data2code/biopython · GitHub

Commits

History for

Commits on Jan 16, 2025

Can drop Optional and Union in typing on Python 3.10 onwards
peterjc
committed
8d5ef92

Commits on Jun 27, 2024

Remove now redundany typing imports
peterjc
committed
87350ad
pep 585 typing rewrites etc using pyupgrade 3.16.0

pyupgrade
authored and
peterjc
committed
519066c

Commits on Jun 26, 2024

Apply isort (forcing single lines, not sorting by type) via ruff

ruff-isort
authored and
peterjc
committed
de0bb21

Commits on May 1, 2024

Misc spellings flagged by codespell (#4716)
peterjc
authored
a47460e

Commits on Mar 14, 2024

ruff format v0.3.1, black v24.2.0
peterjc
committed
57056bb

Commits on Nov 17, 2023

update (#4496)

mdehoon
and
Michiel de Hoon
authored
5bf0ee3

Commits on Nov 2, 2023

ruff fix PIE790 Unnecessary pass statement
peterjc
committed
68e3c98

Commits on Aug 12, 2023

Enable mypy disallow_incomplete_defs setting.
peterjc
committed
0800cf2

Commits on Aug 8, 2023

Basic type hints: QualityIO, SeqRecords, ...

authored and
peterjc
committed
42ca9f2

Commits on Jan 24, 2023

Residue 4BF should map to PHE instead of TYR (#4218)
Tommy Carstensen
authored
2cfbe57

Commits on Aug 8, 2022

Moves solvent accessibility scales from Bio.PDB.DSSP to the new Bio.Data.PDBData (#4027)
sean-workman
authored
e3df58d

Commits on Jul 26, 2022

New module Bio.Data.PDBData to replace/enhance Bio.Data.SCOPData (#3985)
JoaoRodrigues
authored
257143b

Commits on Sep 17, 2021

More f-strings using flynt 0.69
peterjc
committed
ddc7f2a

Commits on Aug 28, 2021

Assorted spelling corrections from codespell
peterjc
committed
51fb8f9

Commits on Jun 11, 2021

speedup and improved readability

eglif
authored and
peterjc
committed
1011040

Commits on Apr 20, 2021

Replace remaining python2-style print commands by python3-style print function (#3533)
mdehoon
authored
1716978

Commits on Jul 24, 2020

removed alphabets (#3133)
mdehoon
authored
f14ec8e

Commits on Jan 14, 2020

update Bio.Data.CodonTable Exception for python3 (#2542)
mdehoon
authored
b118dca

Commits on Jan 13, 2020

Four codons per row; blank gaps for stop codons
peterjc
committed
bdfe3b4
Regenerate CodonTable in more black-like style
peterjc
committed
2c397e5
NCBI genetic code table version 4.5
peterjc
committed
7306b4c
black, version 19.10b, on CodonTable.py

black
authored and
peterjc
committed
e5a74b4
Fix an implicit string concatenation before run black
peterjc
committed
8512d96
Turn off black formatting for autogenerated codon tables
peterjc
committed
5cf2c4b
Disable black on Bio/Data/SCOPData.py
peterjc
committed
bebcf8d

Commits on Jan 7, 2020

black, version 19.3b0, on misc files

black
authored and
peterjc
committed
1ee4836

Commits on Dec 28, 2019

remove explicit class inheritance of object

chris-rands
authored and
peterjc
committed
481d3f0

Commits on Aug 2, 2019

Using tool unify to convert Bio/ to use double quotes

unify
authored and
peterjc
committed
b58c4b6

Commits on Jul 16, 2019

Add __repr__ to NCBICodonTable
peterjc
committed
71a6169

Commits on May 30, 2019

Refactor list/dict/set comprehensions and literal syntax (#2087)

chris-rands
authored and
peterjc
committed
44ecbad

Commits on May 27, 2019

Update CodonTable and Restriction_Dictionary for new release. (#2083)
MarkusPiotrowski
authored
9f2d4d8

Commits on Apr 29, 2019

Fix Bio/Data/CodonTable.py doctest
MarkusPiotrowski
committed
ef71b6d

Commits on Sep 24, 2018

Fix apostrophe character in module docstring
peterjc
authored
0ed3036

Commits on Apr 19, 2018

adding note on "X" nucleotide

chris-rands
authored and
peterjc
committed
a3be8c3