caitlinch (Caitlin Cherryh) · GitHub
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Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Arctic Code Vault Contributor

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@Pool-Box

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caitlinch/README.md

Hello there 👋

About me

  • 👩🏻‍🔬️ I'm Caitlin Cherryh (she/her)
  • 🦿 I'm a cyborg
  • 💕 I like baking 🧁, sewing 🪡, reading 📚, walking 🌲 and Animal Crossing 🎮
  • 💭 Currently developing bioinformatic pipelines for mRNA analysis at ANU
  • 🔗 Visit my website for more details
  • 📫 Reach me at my ANU email address

About my work

  • 🧬 I'm a computational biologist specialising in developing robust and reliable software solutions
  • 👩🏻‍💻️ I'm experienced writing bioinformatic pipelines for high performance computer systems
  • 💻 I'm fluent in R and python
  • 💻 I'm experienced writing in BASH and Julia
  • 🎓 In December 2024, I completed my PhD at The Australian National University, Canberra
  • 📄 See my publications at ORCID and Google Scholar
  • 🗓️ I previously worked as a Research Officer at NCEPH, ANU developing the Pool-Box packages PoolTestR and PoolTools
  • 🗓️ I also worked as a Bioinformatician at the Australian National Wildlife Collection (CSIRO), where I developed a Snakemake pipeline for assembling and analysing highly fragmented DNA sequence data

Pinned Loading

  1. gene_filtering gene_filtering Public

    Investigating the impact of filtering putatively recombinant genes on phylogenetic inference. We quantify the difference in tree topology (both concatenated and summary coalescent methods) between …

    R 2

  2. treelikeness-metrics treelikeness-metrics Public

    Benchmarking existing tests for treelikeness in phylogenetic data and introducing a new test for quantifying treelikeness, the tree proportion.

    HTML 1

  3. ancient_ILS ancient_ILS Public

    Evaluating the impact of conflicting phylogenetic signal on hypotheses of early animal evolution by applying concordance factors

    R 1

  4. metazoan-mixtures metazoan-mixtures Public

    Applying a mixture of trees model to the Metazoan phylogeny

    R 1