Sunbelt Computer Software

PL/B Language Development and Support

Issues · cBioPortal/cbioportal-navigator · GitHub

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Navigator OQL generation: prefer DRIVER over MUT_DRIVER/AMP_DRIVER, don't hallucinate 'p. prefix needed' syntax

#47

· inodb opened

on Jun 5, 2026

Navigator switches study mid-response (claims TCGA PanCanAtlas, links to a single breast study instead)

#48

· inodb opened

on Jun 5, 2026

Navigator should verify data type is available in study before suggesting tab links (methylation/expression/etc.)

#46

· inodb opened

on May 21, 2026

cBioChatAgent routes mutation-frequency comparison to wrong cBioPortal tab (4 turns same session)

#45

· inodb opened

on May 21, 2026

OQL for 'not at position X' patterns is wrong (KRAS not-at-12 → bad syntax; IDH1 not-R132 → filtered to missense, opposite)

#44

· inodb opened

on May 21, 2026

Several wild-type classification / OQL generation / interpretation issues in cBioNavigator

#43

· inodb opened

on May 18, 2026

Combined cross-study group comparison ends up with identical groups containing all samples

#42

· inodb opened

on May 12, 2026

cBioChatAgentBeta: Wrong study chosen when user names a cohort by size (e.g. "50K")

#41

· inodb opened

on May 12, 2026

cBioChatAgentBeta: Hallucinates OQL merged-track syntax fixes instead of verifying

#40

· inodb opened

on May 12, 2026

Pre-configure gene list in result URLs instead of asking user to type genes

#39

· inodb opened

on May 12, 2026

Bot incorrectly says a study does not exist when it does (study lookup gap)

#38

· inodb opened

on May 12, 2026

Don't claim "subtype is displayed as a clinical track" / "click cancer type to drill down" when the link doesn't deliver it

#37

· inodb opened

on May 12, 2026