pairwise-sequence-alignment

Pairwise sequence alignment implementations such as global alignment (Needleman-Wunsch algorithm) and local alignment (Smith-Waterman algorithm)

Usage

Args

Default command

python pairwise_sequence_alignment.py -i ./sequences.txt -a global -m 5 -p -4 -o -10 -e -5

Example

Aligned the sequences of Gene A and Gene B given in the "sequences.txt", once with global and once with local alignment. (parameters: match= 5, mismatch= -4, gap open= -10, gap extend= -5)