akshayonly (Akshay Shirsath) · GitHub
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Chasing bias, variance, and clarity
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Chasing bias, variance, and clarity
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akshayonly/README.md

👋 Hi, I’m Akshay — Bioinformatician from India

  • 🧬 I specialize in comparative genomics, structural bioinformatics, and machine learning applications in biology.
  • 🔍 I'm passionate about decoding biological complexity through data-driven approaches and building scalable bioinformatics workflows.
  • 🧠 My interests span multi-omics integration, functional genomics, and single-cell transcriptomics.
  • 🚀 I'm looking to collaborate on projects at the intersection of genomics and machine learning — from predictive modeling to functional data analysis.
  • 📝 I've co-authored peer-reviewed publications and have hands-on experience with genome analysis, protein structure modeling, and pipeline development.
  • 🌱 Currently sharpening my expertise in Nextflow, single-cell data analysis, and cloud-based bioinformatics.

Find me here

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  1. amr-geno2dock amr-geno2dock Public

    Characterising the AMR landscape via EDA and predictive modelling, and developing an integrated pipeline that bridges genomic surveillance data to protein targets and ligand candidates for downstre…

    Jupyter Notebook

  2. amr-baumannii-ml amr-baumannii-ml Public

    AMR prediction pipeline for Acinetobacter baumannii using whole-genome sequencing and machine learning (Random Forest, Logistic Regression) with SHAP-based gene importance analysis.

    Jupyter Notebook

  3. transcriptomics-scripts transcriptomics-scripts Public

    A structured collection of transcriptomics pipelines for bulk RNA-seq, single-cell, and spatial analysis across bacteria, plants, fungi, and mammals.

    Shell

  4. Anand-Research-Group/complex-I Anand-Research-Group/complex-I Public

    This repository contains a set of scripts and workflows designed to search for Respiratory Complex I (NADH Ubiquinone Oxidoreductase) subunits in prokaryotic genomes and proteomes.

    Jupyter Notebook

  5. knowledge-pipeline-prompts knowledge-pipeline-prompts Public

    The 10-Prompt System That Turns Raw Papers, Videos, and Lectures Into Structured Knowledge