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1. C-Elegans-Contrastive-Learning C-Elegans-Contrastive-Learning Public

   Implementing unsupervised, contrastive learning to infer interpretable motif-based representations of C. Elegans non-coding regulatory regions, inspired by the paper "Inferring fungal cis-regulator…

   HTML

2. C-Elegans-PAM C-Elegans-PAM Public

   Deriving PAM score gene representations for C. Elegans non-coding regions, inspired by the paper "Functional similarity of non-coding regions is revealed in phylogenetic average motif score represe…

   Python

3. SimCLR-and-RNN-on-CIFAR10 SimCLR-and-RNN-on-CIFAR10 Public

   Implementing self-supervised Contrastive Learning using simCLR as outlined on the paper "A Simple Framework for Contrastive Learning of Visual Representations", as well as separately implementing a…

   Python

4. Training-CNN-on-CIFAR10 Training-CNN-on-CIFAR10 Public

   Practicing using pytorch and building CNNs by attempting to train a CNN on the CIFAR-10 data set

   Python

5. Custom-Decision-Tree-and-Random-Forest Custom-Decision-Tree-and-Random-Forest Public

   Building custom Regression and Classification Decision Trees and custom Random Forest ML algorithms from scratch

   Python

6. rnaseq-and-splicing-pipeline rnaseq-and-splicing-pipeline Public

   A bulk RNA-seq and splicing analysis pipeline built using nextflow. It allows the use of different trimming, alignment, reads quantification, and splicing tools

   Nextflow 1