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samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.
C++ 242 33
yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp to 32kb.
C 20 3
SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.
Python 18 3
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