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The scyjava conversion subsystem, and built-in conversion functions.
import collections
import inspect
import logging
import math
from bisect import insort
from importlib.util import find_spec
from pathlib import Path
from typing import Any, Callable, Dict, List, NamedTuple
from jpype import JBoolean, JByte, JChar, JDouble, JFloat, JInt, JLong, JShort
from scyjava._jvm import jimport, start_jvm
from scyjava._types import JavaClasses, is_jarray, isjava, jarray, jclass, jinstance
from scyjava.config import Mode, mode
_logger = logging.getLogger(__name__)
# NB: We cannot use org.scijava.priority.Priority or other Java-side class
# here because we don't want to impose Java-side dependencies, and we don't
# want to require Java to be started before reasoning about priorities.
class Priority:
    FIRST = 1e300
    EXTREMELY_HIGH = 1e6
    VERY_HIGH = 1e4
    HIGH = 1e2
    NORMAL = 0
    LOW = -1e2
    VERY_LOW = -1e4
    EXTREMELY_LOW = -1e6
    LAST = -1e300
def _priority(thing):
    return getattr(thing, "priority", Priority.NORMAL)
def _has_kwargs(f):
    return not isjava(f) and any(
        p.kind == inspect.Parameter.VAR_KEYWORD
        for p in inspect.signature(f).parameters.values()
class Converter(NamedTuple):
    predicate: Callable[[Any], bool]
    converter: Callable[[Any], Any]
    priority: float = Priority.NORMAL
    name: str = "<unnamed>"
    def supports(self, obj: Any, **hints: Dict) -> bool:
        return (
            self.predicate(obj, **hints)
            if _has_kwargs(self.predicate)
            else self.predicate(obj)
    def convert(self, obj: Any, **hints: Dict) -> Any:
        return (
            self.converter(obj, **hints)
            if _has_kwargs(self.converter)
            else self.converter(obj)
    def __lt__(self, other):
        return self.priority < _priority(other)
    def __le__(self, other):
        return self.priority <= _priority(other)
    def __gt__(self, other):
        return self.priority > _priority(other)
    def __ge__(self, other):
        return self.priority >= _priority(other)
    def __str__(self):
        return self.name
def _convert(obj: Any, converters: List[Converter], **hints: Dict) -> Any:
    # NB: The given converters are assumed to be sorted ascending by priority,
    # meaning lower-priority items appear earlier than higher-priority ones.
    # But we want to try the higher priority converters first, so we
    # need to iterate the given converters list starting at the end.
    debug = hints.get("debug", False)
    log = _logger.info if debug else _logger.debug
    log(f"Converting object of type {type(obj)} with hints {hints}")
    for converter in reversed(converters):
        if converter.supports(obj, **hints):
            log(f"- {converter} supports")
            return converter.convert(obj, **hints)
        log(f"- {converter} does not support")
# -- Python to Java --
# Adapted from code posted by vslotman on GitHub:
# https://github.com/kivy/pyjnius/issues/217#issue-145981070
def _raise_type_exception(obj: Any):
    raise TypeError("Unsupported type: " + str(type(obj)))
def _convertMap(obj: collections.abc.Mapping):
    jmap = _jc.LinkedHashMap()
    for k, v in obj.items():
        jk = to_java(k)
        jv = to_java(v)
        jmap.put(jk, jv)
    return jmap
def _convertSet(obj: collections.abc.Set):
    jset = _jc.LinkedHashSet()
    for item in obj:
        jitem = to_java(item)
        jset.add(jitem)
    return jset
def _convertIterable(obj: collections.abc.Iterable):
    jlist = _jc.ArrayList()
    for item in obj:
        jitem = to_java(item)
        jlist.add(jitem)
    return jlist
java_converters: List[Converter] = []
def add_java_converter(converter: Converter) -> None:
    Add a converter to the list used by to_java.
    :param converter: A Converter going from python to java
    insort(java_converters, converter)
def to_java(obj: Any, **hints: Dict) -> Any:
    Recursively convert a Python object to a Java object.
    Supported types include:
    * str -> String
    * bool -> Boolean
    * int -> Integer, Long or BigInteger as appropriate
    * float -> Float, Double or BigDecimal as appropriate
    * dict -> LinkedHashMap
    * set -> LinkedHashSet
    * list -> ArrayList
    There is typically one single destination conversion type and value that
    makes sense. For example, Python str always converts to java.lang.String.
    But in some cases, there are multiple options that can be controlled by
    passing key/value pairs as hints. The base scyjava library includes:
    * int + type='byte' -> Byte
    * int + type='short' -> Short
    * int + type='int' -> Integer
    * int + type='long' -> Long
    * int + type='bigint' -> BigInteger
    * float + type='float' -> Float
    * float + type='double' -> Double
    * float + type='bigdec' -> BigDecimal
    But the scyjava conversion framework is extensible and other
    packages may introduce converters supporting additional hints.
    In the absence of a hint, scyjava makes a best effort to use a sensible
    destination type and value:
    * int values in [-2**31, 2**31-1] convert to Integer
    * int values in [-2**63, 2**63-1] but outside int range convert to Long
    * int values outside Java long range convert to BigInteger
    * conversion of int to Byte or Short must be requested via a hint
    * float values in Float range convert to Float
    * float inf, -inf, and nan convert to Float
    * float values in Double range but outside float range convert to Double
    * float values outside double range convert to BigDecimal
    :param obj:
        The Python object to convert.
    :param hints:
        An optional dictionary of hints, to help scyjava
        make decisions about how to do the conversion.
    :return: A corresponding Java object with the same contents.
    :raise TypeError: if the argument is not one of the aforementioned types.
    start_jvm()
    return _convert(obj, java_converters, **hints)
def _stock_java_converters() -> List[Converter]:
    Construct the Python-to-Java converters supported out of the box.
    :return: A list of Converters
    start_jvm()
    return [
        Converter(
            name="Other (Exceptional) converter",
            predicate=lambda obj: True,
            converter=_raise_type_exception,
            priority=Priority.EXTREMELY_LOW - 1,
        Converter(
            name="None -> None",
            predicate=lambda obj: obj is None,
            converter=lambda obj: None,
            priority=Priority.EXTREMELY_HIGH + 1,
        Converter(
            name="Java object identity",
            predicate=isjava,
            converter=lambda obj: obj,
            priority=Priority.EXTREMELY_HIGH,
        Converter(
            name="str -> java.lang.String",
            predicate=lambda obj: isinstance(obj, str),
            converter=lambda obj: _jc.String(obj.encode("utf-8"), "utf-8"),
        Converter(
            name="bool -> java.lang.Boolean",
            predicate=lambda obj: isinstance(obj, bool),
            converter=_jc.Boolean,
            # NB: Must be higher priority than the int converters,
            # because the bool type extends the int type!
            priority=Priority.NORMAL + 1,
        Converter(
            name="int -> java.lang.Byte",
            predicate=lambda obj, **hints: (
                isinstance(obj, int)
                and ("type" in hints and hints["type"] in ("b", "byte", "Byte"))
                and _jc.Byte.MIN_VALUE <= obj <= _jc.Byte.MAX_VALUE
            converter=_jc.Byte,
            priority=Priority.HIGH,
        Converter(
            name="int -> java.lang.Short",
            predicate=lambda obj, **hints: (
                isinstance(obj, int)
                and ("type" in hints and hints["type"] in ("s", "short", "Short"))
                and _jc.Short.MIN_VALUE <= obj <= _jc.Short.MAX_VALUE
            converter=_jc.Short,
            priority=Priority.HIGH,
        Converter(
            name="int -> java.lang.Integer",
            predicate=lambda obj, **hints: (
                isinstance(obj, int)
                and ("type" not in hints or hints["type"] in ("i", "int", "Integer"))
                and _jc.Integer.MIN_VALUE <= obj <= _jc.Integer.MAX_VALUE
            converter=_jc.Integer,
        Converter(
            name="int -> java.lang.Long",
            predicate=lambda obj, **hints: (
                isinstance(obj, int)
                and ("type" not in hints or hints["type"] in ("j", "l", "long", "Long"))
                and _jc.Long.MIN_VALUE <= obj <= _jc.Long.MAX_VALUE
            converter=_jc.Long,
            priority=Priority.NORMAL - 1,
        Converter(
            name="int -> java.math.BigInteger",
            predicate=lambda obj, **hints: (
                isinstance(obj, int)
                    "type" not in hints
                    or hints["type"] in ("bi", "bigint", "BigInteger")
            converter=lambda obj: _jc.BigInteger(str(obj)),
            priority=Priority.NORMAL - 2,
        Converter(
            name="float -> java.lang.Float",
            predicate=lambda obj, **hints: (
                isinstance(obj, float)
                and ("type" not in hints or hints["type"] in ("f", "float", "Float"))
                    math.isinf(obj)
                    or math.isnan(obj)
                    or -_jc.Float.MAX_VALUE <= obj <= _jc.Float.MAX_VALUE
            converter=_jc.Float,
        Converter(
            name="float -> java.lang.Double",
            predicate=lambda obj, **hints: (
                isinstance(obj, float)
                and ("type" not in hints or hints["type"] in ("d", "double", "Double"))
                    math.isinf(obj)
                    or math.isnan(obj)
                    or -_jc.Double.MAX_VALUE <= obj <= _jc.Double.MAX_VALUE
            converter=_jc.Double,
            priority=Priority.NORMAL - 1,
        Converter(
            name="float -> java.math.BigDecimal",
            predicate=lambda obj, **hints: (
                isinstance(obj, float)
                    "type" not in hints
                    or hints["type"] in ("bd", "bigdec", "BigDecimal")
            converter=lambda obj: _jc.BigDecimal(str(obj)),
            priority=Priority.NORMAL - 2,
        Converter(
            name="pathlib.Path -> java.nio.file.Path",
            predicate=lambda obj: isinstance(obj, Path),
            # Pass an empty String array in addition to our path
            # To make it clear to jep that we want the string-args version
            # JPype is smart enough to know that, but it doesn't mind the extra args
            converter=lambda obj: _jc.Paths.get(str(obj), jarray(_jc.String, [0])),
            priority=Priority.NORMAL + 1,
        Converter(
            name="pandas.DataFrame -> org.scijava.table.Table",
            predicate=lambda obj: type(obj).__name__ == "DataFrame",
            converter=_pandas_to_table,
            priority=Priority.NORMAL + 1,
        Converter(
            name="collections.abc.Mapping -> java.util.Map",
            predicate=lambda obj: isinstance(obj, collections.abc.Mapping),
            converter=_convertMap,
        Converter(
            name="collections.abc.Set -> java.util.Set",
            predicate=lambda obj: isinstance(obj, collections.abc.Set),
            converter=_convertSet,
        Converter(
            name="collections.abc.Iterable -> java.util.Iterable",
            predicate=lambda obj: isinstance(obj, collections.abc.Iterable),
            converter=_convertIterable,
            priority=Priority.NORMAL - 1,
# -- Java to Python --
def _jstr(data):
    if isinstance(data, JavaObject):
        return str(data)
    # NB: We want Python strings to render in single quotes.
    return "{!r}".format(data)
class JavaObject:
    def __init__(self, jobj, intended_class=None):
        if intended_class is None:
            intended_class = _jc.Object
        if not jinstance(jobj, intended_class):
            raise TypeError(
                f"Not a {intended_class.getName()}: {jclass(jobj).getName()}"
        self.jobj = jobj
    def __str__(self):
        return _jstr(self.jobj)
class JavaIterable(JavaObject, collections.abc.Iterable):
    def __init__(self, jobj):
        JavaObject.__init__(self, jobj, _jc.Iterable)
    def __iter__(self):
        return to_python(self.jobj.iterator())
    def __str__(self):
        return "[" + ", ".join(_jstr(v) for v in self) + "]"
class JavaCollection(JavaIterable, collections.abc.Collection):
    def __init__(self, jobj):
        JavaObject.__init__(self, jobj, _jc.Collection)
    def __contains__(self, item):
        # NB: Collection.contains returns boolean, so no need for gentleness.
        return to_python(self.jobj.contains(to_java(item)))
    def __len__(self):
        return to_python(self.jobj.size())
    def __eq__(self, other):
        try:
            if len(self) != len(other):
                return False
            for e1, e2 in zip(self, other):
                if e1 != e2:
                    return False
            return True
        except TypeError:
            return False
class JavaIterator(JavaObject, collections.abc.Iterator):
    def __init__(self, jobj):
        JavaObject.__init__(self, jobj, _jc.Iterator)
    def __next__(self):
        if self.jobj.hasNext():
            # NB: Even if an element cannot be converted,
            # we still want to support Pythonic iteration.
            return to_python(self.jobj.next(), gentle=True)
        raise StopIteration
class JavaList(JavaCollection, collections.abc.MutableSequence):
    def __init__(self, jobj):
        JavaObject.__init__(self, jobj, _jc.List)
    def __getitem__(self, key):
        # NB: Even if an element cannot be converted,
        # we still want Pythonic access to elements.
        return to_python(self.jobj.get(key), gentle=True)
    def __setitem__(self, key, value):
        # NB: List.set(int, Object) returns inserted element; be gentle here.
        return to_python(self.jobj.set(key, to_java(value)), gentle=True)
    def __delitem__(self, key):
        # NB: List.remove(Object) returns boolean, so no need for gentleness.
        return to_python(self.jobj.remove(to_java(key)))
    def insert(self, index, object):
        # NB: List.set(int, Object) returns inserted element; be gentle here.
        return to_python(self.jobj.set(index, to_java(object)), gentle=True)
class JavaMap(JavaObject, collections.abc.MutableMapping):
    def __init__(self, jobj):
        JavaObject.__init__(self, jobj, _jc.Map)
    def __getitem__(self, key):
        # NB: Even if an element cannot be converted,
        # we still want Pythonic access to elements.
        return to_python(self.jobj.get(to_java(key)), gentle=True)
    def __setitem__(self, key, value):
        # NB: Map.put(Object, Object) returns inserted value; be gentle here.
        put_return: bool = self.jobj.put(to_java(key), to_java(value))
        return to_python(put_return, gentle=True)
    def __delitem__(self, key):
        # NB: Map.remove(Object) returns the removed key; be gentle here.
        return to_python(self.jobj.remove(to_java(key)), gentle=True)
    def keys(self):
        return to_python(self.jobj.keySet())
    def __iter__(self):
        return self.keys().__iter__()
    def __len__(self):
        return to_python(self.jobj.size())
    def __eq__(self, other):
        try:
            if len(self) != len(other):
                return False
            for k in self:
                if k not in other or self[k] != other[k]:
                    return False
            return True
        except TypeError:
            return False
    def __str__(self):
        def item_str(k, v):
            return _jstr(k) + ": " + _jstr(v)
        return "{" + ", ".join(item_str(k, v) for k, v in self.items()) + "}"
class JavaSet(JavaCollection, collections.abc.MutableSet):
    def __init__(self, jobj):
        JavaObject.__init__(self, jobj, _jc.Set)
    def add(self, item):
        # NB: Set.add returns boolean, so no need for gentleness.
        return to_python(self.jobj.add(to_java(item)))
    def discard(self, item):
        # NB: Set.remove returns boolean, so no need for gentleness.
        return to_python(self.jobj.remove(to_java(item)))
    def __iter__(self):
        return to_python(self.jobj.iterator())
    def __eq__(self, other):
        try:
            if len(self) != len(other):
                return False
            for k in self:
                if k not in other:
                    return False
            return True
        except TypeError:
            return False
    def __str__(self):
        return "{" + ", ".join(_jstr(v) for v in self) + "}"
py_converters: List[Converter] = []
def add_py_converter(converter: Converter) -> None:
    Add a converter to the list used by to_python.
    :param converter: A Converter from java to python
    insort(py_converters, converter)
def to_python(data: Any, gentle: bool = False) -> Any:
    Recursively convert a Java object to a Python object.
    Supported types include:
    * String, Character -> str
    * Boolean -> bool
    * Byte, Short, Integer, Long, BigInteger -> int
    * Float, Double, BigDecimal -> float
    * Map -> collections.abc.MutableMapping (dict-like)
    * Set -> collections.abc.MutableSet (set-like)
    * List -> collections.abc.MutableSequence (list-like)
    * Collection -> collections.abc.Collection
    * Iterable -> collections.abc.Iterable
    * Iterator -> collections.abc.Iterator
    :param data:
        The Java object to convert.
    :param gentle:
        If set, and the type cannot be converted, leaves
        the data alone rather than raising a TypeError.
    :return: A corresponding Python object with the same contents.
    :raise TypeError:
        if the argument is not one of the aforementioned types,
        and the gentle flag is not set.
    start_jvm()
        return _convert(data, py_converters)
    except TypeError as exc:
        if gentle:
            return data
        raise exc
def _stock_py_converters() -> List:
    Construct the Java-to-Python converters supported out of the box.
    :return: A list of Converters
    start_jvm()
    converters = [
        Converter(
            name="Other (Exceptional) converter",
            predicate=lambda obj: True,
            converter=_raise_type_exception,
            priority=Priority.EXTREMELY_LOW - 1,
        Converter(
            name="Python object identity",
            predicate=lambda obj: not isjava(obj),
            converter=lambda obj: obj,
            priority=Priority.EXTREMELY_HIGH,
        Converter(
            name="java.lang.Boolean -> bool",
            predicate=lambda obj: jinstance(obj, _jc.Boolean),
            converter=lambda obj: obj.booleanValue(),
        Converter(
            name="java.lang.Byte -> int",
            predicate=lambda obj: jinstance(obj, _jc.Byte),
            converter=lambda obj: int(obj.byteValue()),
        Converter(
            name="java.lang.Character -> str",
            predicate=lambda obj: jinstance(obj, _jc.Character),
            converter=lambda obj: str,
        Converter(
            name="java.lang.Double -> float",
            predicate=lambda obj: jinstance(obj, _jc.Double),
            converter=lambda obj: float(obj.doubleValue()),
        Converter(
            name="java.lang.Float -> float",
            predicate=lambda obj: jinstance(obj, _jc.Float),
            converter=lambda obj: float(obj.floatValue()),
        Converter(
            name="java.lang.Integer -> int",
            predicate=lambda obj: jinstance(obj, _jc.Integer),
            converter=lambda obj: int(obj.intValue()),
        Converter(
            name="java.lang.Long -> int",
            predicate=lambda obj: jinstance(obj, _jc.Long),
            converter=lambda obj: int(obj.longValue()),
        Converter(
            name="java.lang.Short -> int",
            predicate=lambda obj: jinstance(obj, _jc.Short),
            converter=lambda obj: int(obj.shortValue()),
        Converter(
            name="java.lang.String -> str",
            predicate=lambda obj: jinstance(obj, _jc.String),
            converter=lambda obj: str(obj),
        Converter(
            name="java.math.BigInteger -> int",
            predicate=lambda obj: jinstance(obj, _jc.BigInteger),
            converter=lambda obj: int(str(obj)),
        Converter(
            name="java.math.BigDecimal -> float",
            predicate=lambda obj: jinstance(obj, _jc.BigDecimal),
            converter=lambda obj: float(str(obj)),
        Converter(
            name="java.util.List -> scyjava.JavaList (list-like)",
            predicate=lambda obj: jinstance(obj, _jc.List),
            converter=JavaList,
        Converter(
            name="java.util.Map -> scyjava.JavaMap (dict-like)",
            predicate=lambda obj: jinstance(obj, _jc.Map),
            converter=JavaMap,
        Converter(
            name="java.util.Set -> scyjava.JavaSet (set-like)",
            predicate=lambda obj: jinstance(obj, _jc.Set),
            converter=JavaSet,
        Converter(
            name="java.util.Collection -> "
            "scyjava.JavaCollection (collections.abc.Collection)",
            predicate=lambda obj: jinstance(obj, _jc.Collection),
            converter=JavaCollection,
            priority=Priority.NORMAL - 1,
        Converter(
            name="java.lang.Iterable -> "
            "scyjava.JavaIterable (collections.abc.Iterable)",
            predicate=lambda obj: jinstance(obj, _jc.Iterable),
            converter=JavaIterable,
            priority=Priority.NORMAL - 1,
        Converter(
            name="java.util.Iterator -> "
            "scyjava.JavaIterator (collections.abc.Iterator)",
            predicate=lambda obj: jinstance(obj, _jc.Iterator),
            converter=JavaIterator,
            priority=Priority.NORMAL - 1,
        Converter(
            name="java.nio.file.Path -> pathlib.Path",
            predicate=lambda obj: jinstance(obj, _jc.Path),
            converter=lambda obj: Path(str(obj)),
            priority=Priority.NORMAL + 1,
        Converter(
            name="jarray -> list",
            predicate=lambda obj: is_jarray(obj),
            converter=lambda obj: [to_python(o) for o in obj],
            priority=Priority.VERY_LOW,
    if find_spec("pandas"):
        converters.append(
            Converter(
                name="org.scijava.table.Table -> pandas.DataFrame",
                predicate=_is_table,
                converter=_convert_table,
                priority=Priority.HIGH,
    if mode == Mode.JPYPE:
        converters.extend(
                Converter(
                    name="JBoolean -> bool",
                    predicate=lambda obj: isinstance(obj, JBoolean),
                    converter=bool,
                    priority=Priority.NORMAL + 1,
                Converter(
                    name="JByte/JInt/JLong/JShort -> int",
                    predicate=lambda obj: isinstance(obj, (JByte, JInt, JLong, JShort)),
                    converter=int,
                    priority=Priority.NORMAL + 1,
                Converter(
                    name="JDouble/JFloat -> float",
                    predicate=lambda obj: isinstance(obj, (JDouble, JFloat)),
                    converter=float,
                    priority=Priority.NORMAL + 1,
                Converter(
                    name="JChar -> str",
                    predicate=lambda obj: isinstance(obj, JChar),
                    converter=str,
                    priority=Priority.NORMAL + 1,
        if find_spec("numpy"):
            converters.append(
                Converter(
                    name="primitive array -> numpy.ndarray",
                    predicate=_supports_jarray_to_ndarray,
                    converter=_jarray_to_ndarray,
    return converters
###############################
# Java array -> NumPy ndarray #
###############################
def _jarray_to_ndarray(jarr):
    Convert the given Java primitive array into a NumPy ndarray.
    :param jarr: The Java primitive array
    :return: The converted NumPy ndarray
    np = _import_numpy()
    assert _supports_jarray_to_ndarray(jarr)
    element_type = _jarray_element_type(jarr)
    # fmt: off
    jarraytype_map = {
        JBoolean: np.bool_,
        JByte:    np.int8,
        # JChar:  np.???,
        JDouble:  np.float64,
        JFloat:   np.float32,
        JInt:     np.int32,
        JLong:    np.int64,
        JShort:   np.int16,
    # fmt: on
    dtype = jarraytype_map[element_type]
    # Use a bytearray instead of memoryview for np.frombuffer.
    # Casting memoryview() on a Java array copies the array's content
    # into a buffer which does not get released when a new view is
    # requested. If the Java array's data changes a new memoryview will
    # contain the old buffer data. The view and any object created with
    # it must be deleted (del or =None) to release the buffer before
    # requesting a new view. Instead of utilizing the buffer
    # memoryview creates of the Java array, we obtain the buffer ouselves
    # as a mutable bytearray.
    bb = bytearray(jarr)
    ndarray = np.frombuffer(bb, dtype=dtype)
    del bb  # release the buffer
    return ndarray.reshape(_jarray_shape(jarr))
def _supports_jarray_to_ndarray(obj):
    Return True iff the given object is convertible to a NumPy ndarray
    via the _jarray_to_ndarray function.
    :param obj: The object to check for convertibility
    :return: True iff conversion to a NumPy ndarray is possible
    element_type = _jarray_element_type(obj)
    return element_type in (JBoolean, JByte, JDouble, JFloat, JInt, JLong, JShort)
def _jarray_element_type(jarr):
    if not is_jarray(jarr):
        return None
    element = jarr
    while is_jarray(element):
        element = element[0]
    return type(element)
def _jarray_shape(jarr):
    if not is_jarray(jarr):
        return None
    shape = []
    element = jarr
    while is_jarray(element):
        shape.append(len(element))
        element = element[0]
    return shape
def _import_numpy():
        import numpy as np
        return np
    except ImportError as e:
        msg = "The NumPy library is missing (https://numpy.org/). "
        msg += "Please install it before using this function."
        raise RuntimeError(msg) from e
######################################
# SciJava table <-> pandas DataFrame #
######################################
def _is_table(obj: Any) -> bool:
    """Check if obj is a table."""
        return jinstance(obj, "org.scijava.table.Table")
    except BaseException:
        # No worries if scijava-table is not available.
        return False
def _convert_table(obj: Any):
    """Convert obj to a table."""
        return _table_to_pandas(obj)
    except BaseException:
        # No worries if scijava-table is not available.
        return None
def _import_pandas():
        import pandas as pd
        return pd
    except ImportError as e:
        msg = "The Pandas library is missing (http://pandas.pydata.org/). "
        msg += "Please install it before using this function."
        raise RuntimeError(msg) from e
def _table_to_pandas(table):
    pd = _import_pandas()
    data = []
    headers = []
    for i, column in enumerate(table.toArray()):
        data.append(column.toArray())
        headers.append(str(table.getColumnHeader(i)))
    for j in range(len(data)):
        data[j] = to_python(data[j])
    df = pd.DataFrame(data).T
    df.columns = headers
    return df
def _pandas_to_table(df):
    if len(df.dtypes.unique()) > 1:
        TableClass = jimport("org.scijava.table.DefaultGenericTable")
        table_type = df.dtypes.unique()[0]
        if table_type.name.startswith("float"):
            TableClass = jimport("org.scijava.table.DefaultFloatTable")
        elif table_type.name.startswith("int"):
            TableClass = jimport("org.scijava.table.DefaultIntTable")
        elif table_type.name.startswith("bool"):
            TableClass = jimport("org.scijava.table.DefaultBoolTable")
        else:
            msg = "The type '{}' is not supported.".format(table_type.name)
            raise Exception(msg)
    table = TableClass(*df.shape[::-1])
    for c, column_name in enumerate(df.columns):
        table.setColumnHeader(c, column_name)
    for i, (_, row) in enumerate(df.iterrows()):
        for c, value in enumerate(row):
            header = df.columns[c]
            table.set(header, i, to_java(value))
    return table
class _JavaClasses(JavaClasses):
    @JavaClasses.java_import
    def Boolean(self):       return "java.lang.Boolean"        # noqa: E272
    @JavaClasses.java_import
    def Byte(self):          return "java.lang.Byte"           # noqa: E272
    @JavaClasses.java_import
    def Character(self):     return "java.lang.Character"      # noqa: E272
    @JavaClasses.java_import
    def Double(self):        return "java.lang.Double"         # noqa: E272
    @JavaClasses.java_import
    def Float(self):         return "java.lang.Float"          # noqa: E272
    @JavaClasses.java_import
    def Integer(self):       return "java.lang.Integer"        # noqa: E272
    @JavaClasses.java_import
    def Iterable(self):      return "java.lang.Iterable"       # noqa: E272
    @JavaClasses.java_import
    def Long(self):          return "java.lang.Long"           # noqa: E272
    @JavaClasses.java_import
    def Object(self):        return "java.lang.Object"         # noqa: E272
    @JavaClasses.java_import
    def Short(self):         return "java.lang.Short"          # noqa: E272
    @JavaClasses.java_import
    def String(self):        return "java.lang.String"         # noqa: E272
    @JavaClasses.java_import
    def BigDecimal(self):    return "java.math.BigDecimal"     # noqa: E272
    @JavaClasses.java_import
    def BigInteger(self):    return "java.math.BigInteger"     # noqa: E272
    @JavaClasses.java_import
    def Path(self):          return "java.nio.file.Path"       # noqa: E272
    @JavaClasses.java_import
    def Paths(self):         return "java.nio.file.Paths"      # noqa: E272
    @JavaClasses.java_import
    def ArrayList(self):     return "java.util.ArrayList"      # noqa: E272
    @JavaClasses.java_import
    def Collection(self):    return "java.util.Collection"     # noqa: E272
    @JavaClasses.java_import
    def Iterator(self):      return "java.util.Iterator"       # noqa: E272
    @JavaClasses.java_import
    def LinkedHashMap(self): return "java.util.LinkedHashMap"  # noqa: E272
    @JavaClasses.java_import
    def LinkedHashSet(self): return "java.util.LinkedHashSet"  # noqa: E272
    @JavaClasses.java_import
    def List(self):          return "java.util.List"           # noqa: E272
    @JavaClasses.java_import
    def Map(self):           return "java.util.Map"            # noqa: E272
    @JavaClasses.java_import
    def Set(self):           return "java.util.Set"            # noqa: E272
_jc = _JavaClasses()
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