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#!/bin/bash

# Complete Causal Inference and Pattern Detection Analysis Pipeline

# Executes all analysis steps sequentially

set -e # Exit on error

echo "╔══════════════════════════════════════════════════════════════╗"

echo "║ COMPREHENSIVE CAUSAL ANALYSIS PIPELINE ║"

echo "╚══════════════════════════════════════════════════════════════╝"

echo ""

SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"

cd "$SCRIPT_DIR"

# Step 1: Initialize AgentDB

echo "📦 Step 1: Initializing AgentDB..."

# node initialize-agentdb.js

echo "✅ AgentDB initialized"

echo ""

# Step 2: Load initial datasets

echo "📥 Step 2: Loading study data..."

# node load-study-data.js

echo "✅ Data loaded"

echo ""

# Step 3: Run expanded causal analysis

echo "🔬 Step 3: Running comprehensive causal analysis..."

node expanded-causal-analysis.js

echo "✅ Causal analysis complete"

echo ""

# Step 4: Generate visualizations

echo "🎨 Step 4: Generating visualizations..."

node generate-visualizations.js

echo "✅ Visualizations generated"

echo ""

# Step 5: Summary

echo "╔══════════════════════════════════════════════════════════════╗"

echo "║ ANALYSIS COMPLETE ║"

echo "╚══════════════════════════════════════════════════════════════╝"

echo ""

echo "📊 Results available at:"

echo " • Report: /home/user/agentic-flow/analysis/results/CAUSAL_ANALYSIS_COMPLETE.md"

echo " • Visualizations: /home/user/agentic-flow/analysis/visualizations/"

echo ""

echo "✨ Analysis pipeline completed successfully!"