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    <h1>Plot UMAP embedding</h1>
    <div class="hidden name"><code>plotUmap.Rd</code></div>
    <div class="ref-description">
    <p>Plots UMAP embedding stored in <code>reducedDims()</code> slot.</p>
    <pre class="usage"><span class='fu'>plotUmap</span>(<span class='no'>scCNA</span>)</pre>
    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
    <table class="ref-arguments">
    <colgroup><col class="name" /><col class="desc" /></colgroup>
      <th>scCNA</th>
      <td><p>scCNA object.</p></td>
    </table>
    <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
    <p>A reduced dimension representation with UMAP in the slot <code>reducedDim</code> from scCNA object. Access reduced dimensions slot with: <code>SummarizedExperiment::reducedDim(scCNA, 'umap', withDimnames = FALSE)</code>. <code>plotUmap</code> searches for cluster information in the <code><a href='https://rdrr.io/pkg/SummarizedExperiment/man/SummarizedExperiment-class.html'>SummarizedExperiment::colData()</a></code> metadata and colors the clusters according to that information.</p>
    <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
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    <h2>Contents</h2>
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      <li><a href="#arguments">Arguments</a></li>
      <li><a href="#value">Value</a></li>
      <li><a href="#examples">Examples</a></li>
    <h2>Author</h2>
    <p>Darlan Conterno Minussi</p>
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