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empa-scientific-it
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#
Stage 1: Build environment
FROM
quay.io/jupyter/minimal-notebook:latest AS builder
#
Define build argument for PyTorch variant (cpu or cuda)
ARG
PYTORCH_VARIANT=cpu
#
Switch to root user to install additional dependencies
USER
root
RUN
apt-get update && \
apt-get install -y --no-install-recommends \
build-essential \
gcc \
g++ \
libffi-dev \
libgl1 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
#
Switch back to the default notebook user
USER
${NB_UID}
#
Set up the Conda environment
COPY
docker/environment.yml /tmp/environment.yml
RUN
mamba env update -n base -f /tmp/environment.yml && \
#
Force remove any existing PyTorch installations first
pip uninstall -y torch torchvision && \
#
Install PyTorch packages without cache - conditionally based on variant
if [
"$PYTORCH_VARIANT"
=
"cpu"
]; then \
echo
"Installing CPU-only PyTorch"
&& \
pip install --no-cache-dir --force-reinstall torch torchvision --index-url https://download.pytorch.org/whl/cpu; \
else \
echo
"Installing CUDA-enabled PyTorch"
&& \
pip install --no-cache-dir --force-reinstall torch torchvision; \
fi && \
#
Clean up all package caches to reduce image size
mamba clean --all -f -y && \
#
Remove pip cache
rm -rf ~/.cache/pip && \
fix-permissions
"${CONDA_DIR}"
&& \
fix-permissions
"/home/${NB_USER}"
#
Stage 2: Runtime environment - creates a lighter final image
FROM
quay.io/jupyter/minimal-notebook:latest
#
Inherit build argument for image labeling
ARG
PYTORCH_VARIANT=cpu
#
Metadata labels
LABEL
org.opencontainers.image.title=
"Python Tutorial"
LABEL
org.opencontainers.image.description=
"A containerized Python tutorial environment with Jupyter Lab."
LABEL
org.opencontainers.image.authors=
"Empa Scientific IT <scientificit@empa.ch>"
LABEL
org.opencontainers.image.url=
"https://github.com/empa-scientific-it/python-tutorial"
LABEL
org.opencontainers.image.source=
"https://github.com/empa-scientific-it/python-tutorial"
LABEL
org.opencontainers.image.version=
"1.0.0"
LABEL
org.opencontainers.image.licenses=
"MIT"
LABEL
org.opencontainers.image.variant=
"pytorch-${PYTORCH_VARIANT}"
#
Switch to root user to install minimal dependencies
USER
root
RUN
apt-get update && \
apt-get install -y --no-install-recommends \
libgl1 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
#
System-wide Jupyter Server config
COPY
docker/jupyter_server_config.py /opt/conda/etc/jupyter/
#
Jupyter Lab settings
RUN
mkdir -p /opt/conda/share/jupyter/lab/settings
COPY
docker/overrides.json /opt/conda/share/jupyter/lab/settings/
#
System-wide IPython profile config
RUN
mkdir -p /opt/conda/etc/ipython
COPY
docker/ipython_config.py /opt/conda/etc/ipython/
#
Switch back to the default notebook user
USER
${NB_UID}
#
Copy the conda environment from the builder stage
COPY
--from=builder ${CONDA_DIR} ${CONDA_DIR}
#
Copy home directory with configurations
COPY
--from=builder --chown=${NB_UID}:${NB_GID} /home/${NB_USER} /home/${NB_USER}
#
Set the working directory to user's home (repository will be cloned here by Renku)
WORKDIR
/home/${NB_USER}
#
Use the default ENTRYPOINT from the base image to start Jupyter Lab
ENTRYPOINT
[
"tini"
,
"-g"
,
"--"
,
"start.sh"
]
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