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unique_id_len.py

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import sys, getopt

from SFF import SFFMessage

if __name__ == "__main__":

input_file = ""

output_file = ""

optlist, args = getopt.getopt(sys.argv[1:], ':o:')

if(len(args) < 1):

print "Usage: %s [options] <inputfile>"

print "options:"

print " -o <output file>"

sys.exit(1)

for o, a in optlist:

if o == "-o":

output_file = a

input_file = args[0]

fp = open(input_file, "r")

id_len_matches = []

for line in fp:

sff_msg = SFFMessage(line)

uniq = sff_msg.wid + ":" + sff_msg.len

if (uniq not in id_len_matches):

id_len_matches.append(uniq)

fp.close()

if(output_file != ""):

fp = open(output_file, "w")

found_str = "Found %d unique ID and Len matches" % (len(id_len_matches))

print found_str

if(output_file != ""):

fp.write(found_str + '\n')

for item in id_len_matches:

combo = item.split(':')

found_id_str = ("ID: %s Len: %s") % (combo[0], combo[1])

print found_id_str

if(output_file != ""):

fp.write(found_id_str + '\n')