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#
Ignore the build directory (and its sub-directories):
build
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Ignore the distribution directory
dist
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Ignore backup files from some Unix editors,
\#
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\#
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~
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.swp
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.bak
#
Ignore patches and any original files created by patch command
*
.diff
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.patch
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.orig
*
.rej
#
Ignore these hidden files from Mac OS X
.DS_Store
#
Ignore hidden files from Dolphin window manager
.directory
#
Ignore all compiled python files (e.g. from running the unit tests):
*
.pyc
*
.pyo
*
.py-e
*
.pyd
#
Ignore all Jython class files (present if using Jython)
*
.class
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*
.so
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.tox
/
#
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MANIFEST
#
Ignore potential directory created during install:
biopython.egg-info
#
The graphics unit tests produce output files for human inspection
#
(at the time of writing, only PDF and PNG files are created)
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.eps
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#
This file is downloaded when testing the Bio.SeqIO.GckIO module.
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biosql.ini
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cyano_result
*
#
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out.bam
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running Tests/test_Tutorial.py
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