<?xml version="1.0" encoding="UTF-8"?>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">

<parent>

<artifactId>biojava</artifactId>

<groupId>org.biojava</groupId>

<version>7.2.5-SNAPSHOT</version>

</parent>

<modelVersion>4.0.0</modelVersion>

<artifactId>biojava-genome</artifactId>

<name>biojava-genome</name>

<licenses>

<license>

<name>GNU LGPL v2</name>

<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>

<distribution>repo</distribution>

</license>

</licenses>

<build>

<plugins>

<!-- Excluding demo package is required for avoiding namespace clashes (demo package is in all modules) for signing the jar. See issue #387 -->

<plugin>

<groupId>org.apache.maven.plugins</groupId>

<artifactId>maven-jar-plugin</artifactId>

<configuration>

<excludes>

<exclude>demo/**</exclude>

</excludes>

</configuration>

</plugin>

<plugin>

<groupId>org.apache.maven.plugins</groupId>

<artifactId>maven-compiler-plugin</artifactId>

<configuration>

<debug>true</debug>

</configuration>

</plugin>

<plugin>

<artifactId>maven-clean-plugin</artifactId>

<configuration>

<filesets>

<fileset>

<directory>${basedir}/src/test/resources/testoutput</directory>

<includes>

<include>**/volvox_all.faa</include>

</includes>

</fileset>

</filesets>

</configuration>

</plugin>

</plugins>

</build>

<dependencies>

<dependency>

<groupId>com.google.guava</groupId>

<artifactId>guava</artifactId>

<scope>compile</scope>

</dependency>

<dependency>

<groupId>junit</groupId>

<artifactId>junit</artifactId>

<scope>test</scope>

</dependency>

<dependency>

<groupId>org.biojava</groupId>

<artifactId>biojava-core</artifactId>

<version>7.2.5-SNAPSHOT</version>

<scope>compile</scope>

</dependency>

<dependency>

<groupId>org.biojava</groupId>

<artifactId>biojava-alignment</artifactId>

<version>7.2.5-SNAPSHOT</version>

<scope>compile</scope>

</dependency>

<dependency>

<groupId>junit-addons</groupId>

<artifactId>junit-addons</artifactId>

<version>1.4</version>

<scope>test</scope>

<exclusions>

<exclusion>

<groupId>xerces</groupId>

<artifactId>xmlParserAPIs</artifactId>

</exclusion>

<exclusion>

<groupId>xerces</groupId>

<artifactId>xercesImpl</artifactId>

</exclusion>

</exclusions>

</dependency>

<!-- logging dependencies (managed by parent pom, don't set versions or scopes here) -->

<dependency>

<groupId>org.slf4j</groupId>

<artifactId>slf4j-api</artifactId>

</dependency>

<!-- binding for log4j2, scope=runTime set in parent pom -->

<dependency>

<groupId>org.apache.logging.log4j</groupId>

<artifactId>log4j-slf4j2-impl</artifactId>

</dependency>

<dependency>

<groupId>org.apache.logging.log4j</groupId>

<artifactId>log4j-api</artifactId>

</dependency>

<dependency>

<groupId>org.apache.logging.log4j</groupId>

<artifactId>log4j-core</artifactId>

</dependency>

</dependencies>

</project>