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version: "3.7"

services:

db:

image: postgres:11

restart: always

environment:

POSTGRES_USER: ${PSQL_USERNAME}

POSTGRES_PASSWORD: ${PSQL_PASSWORD}

POSTGRES_DB: ${PSQL_DATABASE}

POSTGRES_PORT: ${PSQL_PORT}

TZ: 'America/Los_Angeles'

PGTZ: 'America/Los_Angeles'

ports:

- "${PSQL_PORT}:${PSQL_PORT}"

command: postgres -c config_file=/etc/postgresql.conf -c hba_file=/etc/pg_hba.conf

volumes:

- "./db/postgresql.conf:/etc/postgresql.conf"

- "./db/pg_hba.conf:/etc/pg_hba.conf"

- curation_db_storage:/var/lib/postgresql/data/

- "${CALTECH_CURATION_FILES_EXTERNAL_PATH}:${CALTECH_CURATION_FILES_INTERNAL_PATH}"

healthcheck:

test: [ "CMD-SHELL", "pg_isready -U ${PSQL_USERNAME}" ]

interval: 10s

timeout: 5s

retries: 5

networks:

- caltech-curation-network

hostname: curation_db

postgres_prom_exporter:

restart: unless-stopped

image: wrouesnel/postgres_exporter

environment:

DATA_SOURCE_URI: curation_db:${PSQL_PORT}?sslmode=disable

DATA_SOURCE_USER: ${PSQL_USERNAME}

DATA_SOURCE_PASS: ${PSQL_PASSWORD}

TZ: 'America/Los_Angeles'

depends_on:

- db

networks:

- caltech-curation-network

hostname: postgres_prom_exporter

prometheus:

restart: unless-stopped

image: prom/prometheus

volumes:

- "./prometheus/prometheus.yml:/etc/prometheus/prometheus.yml"

- "./prometheus/rules.yml:/etc/prometheus/rules.yml"

- "${VOLUMES_DIR}/prometheus:/prometheus"

depends_on:

- postgres_prom_exporter

# - grok_exporter_email_extr

# - grok_exporter_expression_cluster

# - grok_exporter_antibody

# - grok_exporter_vfp

# - grok_exporter_afp

# - grok_exporter_afp_reminders

# - grok_exporter_afp_digests

networks:

- caltech-curation-network

environment:

TZ: 'America/Los_Angeles'

hostname: prometheus

alertmanager:

container_name: alert_manager

restart: unless-stopped

image: prom/alertmanager

#ports:

# - "9093:9093"

volumes:

- ./prometheus/alertmanager.yml:/etc/alertmanager/alertmanager.yml

networks:

- caltech-curation-network

hostname: alertmanager

grafana:

image: grafana/grafana

restart: unless-stopped

ports:

- "${GRAFANA_PORT}:3000"

volumes:

- "${VOLUMES_DIR}/grafana:/var/lib/grafana"

- ./grafana/grafana.ini:/etc/grafana/grafana.ini

depends_on:

- db

- prometheus

networks:

- caltech-curation-network

environment:

GF_SERVER_ROOT_URL: "https://${HOST_NAME}/grafana"

TZ: 'America/Los_Angeles'

jenkins:

image: jenkins/jenkins:lts

restart: always

privileged: true

user: root

ports:

- 49001:8080

- 50000:50000

container_name: jenkins

volumes:

- "${VOLUMES_DIR}/jenkins:/var/jenkins_home"

- /var/run/docker.sock:/var/run/docker.sock

- /usr/bin/docker:/usr/bin/docker

curation:

restart: unless-stopped

build:

context: .

dockerfile: curation/Dockerfile

args:

SSH_ACEDB_PASSWORD: "${SSH_ACEDB_PASSWORD}"

SSH_CITACE_PASSWORD: "${SSH_CITACE_PASSWORD}"

CALTECH_CURATION_FILES_INTERNAL_PATH: "${CALTECH_CURATION_FILES_INTERNAL_PATH}"

devices:

- /dev/fuse:/dev/fuse:rwm

cap_add:

- SYS_ADMIN

security_opt:

- apparmor:unconfined

environment:

CALTECH_CURATION_FILES_INTERNAL_PATH: "${CALTECH_CURATION_FILES_INTERNAL_PATH}"

HOST_NAME: "${HOST_NAME}"

SSL_PORT: "${SSL_PORT}"

RESTIC_REPOSITORY: "${RESTIC_REPO}"

AWS_ACCESS_KEY_ID: "${AWS_ACCESS_KEY_ID_RESTIC}"

AWS_SECRET_ACCESS_KEY: "${AWS_SECRET_ACCESS_KEY_RESTIC}"

RESTIC_PASSWORD: "${RESTIC_PASSWORD}"

OKTA_DOMAIN: "${OKTA_DOMAIN}"

OKTA_API_AUDIENCE: "${OKTA_API_AUDIENCE}"

OKTA_CLIENT_ID: "${OKTA_CLIENT_ID}"

OKTA_CLIENT_SECRET: "${OKTA_CLIENT_SECRET}"

COGNITO_ADMIN_CLIENT_ID: "${COGNITO_ADMIN_CLIENT_ID}"

COGNITO_ADMIN_CLIENT_SECRET: "${COGNITO_ADMIN_CLIENT_SECRET}"

COGNITO_TOKEN_URL: "${COGNITO_TOKEN_URL}"

API_PORT: "${AGR_ABC_API_PORT}"

API_SERVER: "${AGR_ABC_API_SERVER}"

ENV_STATE: "${ENV_STATE}"

ports:

- "${CURATION_FORMS_PORT}:80"

- "${SSH_PORT}:22"

volumes:

- "${HTTPD_AUTH_FILE_PATH}:/etc/httpd/passwd/passwords"

- "${SRC_DIR_PATH}/curation/website/pub:/usr/lib/pub/"

- "${SRC_DIR_PATH}/curation/website/priv:/usr/lib/priv/"

- "${SRC_DIR_PATH}/curation/scripts/:/usr/lib/scripts/"

- "${SRC_DIR_PATH}/curation/user_files/:/usr/lib/user_files/"

- "${ENV_FILE_PATH}:/usr/lib/.env"

- "${SRC_DIR_PATH}/curation/crontab:/etc/cron.d/curation_crontab"

- "${SSL_CERTIFICATE_DIR}:/etc/ssl_certificate"

- "${CALTECH_CURATION_FILES_EXTERNAL_PATH}:${CALTECH_CURATION_FILES_INTERNAL_PATH}"

- "${VOLUMES_DIR}:/usr/caltech_volumes"

networks:

- caltech-curation-network

depends_on:

- reverse_proxy

- db

hostname: curation

acedb:

# run 'xhost +local:root' on the host to give the right permissions to the instance

build:

context: acedb

dockerfile: Dockerfile

args:

CALTECH_CURATION_FILES_INTERNAL_PATH: "${CALTECH_CURATION_FILES_INTERNAL_PATH}"

environment:

- DISPLAY=${DISPLAY}

volumes:

- /tmp/.X11-unix:/tmp/.X11-unix

- "${CALTECH_CURATION_FILES_EXTERNAL_PATH}:${CALTECH_CURATION_FILES_INTERNAL_PATH}"

network_mode: host

grok_exporter_email_extr:

restart: unless-stopped

container_name: grok_exporter_email_extr

image: grok_exporter

build: prometheus/grok_exporter/

#ports:

# - "9144:9144"

volumes:

- ./prometheus/grok_exporter/config_email_extr.yml:/grok/config.yml

- /var/log/:/grok/log/

networks:

- caltech-curation-network

hostname: grok_exporter_email_extr

grok_exporter_expression_cluster:

restart: unless-stopped

container_name: grok_exporter_expression_cluster

image: grok_exporter

build: prometheus/grok_exporter/

#ports:

# - "9144:9144"

volumes:

- ./prometheus/grok_exporter/config_expr_cluster.yml:/grok/config.yml

- /var/log/:/grok/log/

networks:

- caltech-curation-network

hostname: grok_exporter_expr_cluster

grok_exporter_antibody:

restart: unless-stopped

container_name: grok_exporter_antibody

image: grok_exporter

build: prometheus/grok_exporter/

#ports:

# - "9144:9144"

volumes:

- ./prometheus/grok_exporter/config_antibody.yml:/grok/config.yml

- /var/log/:/grok/log/

networks:

- caltech-curation-network

hostname: grok_exporter_antibody

grok_exporter_afp:

restart: unless-stopped

container_name: grok_exporter_afp

image: grok_exporter

build: prometheus/grok_exporter/

#ports:

# - "9145:9144"

volumes:

- ./prometheus/grok_exporter/config_afp.yml:/grok/config.yml

- /var/log/:/grok/log/

networks:

- caltech-curation-network

hostname: grok_exporter_afp

grok_exporter_afp_reminders:

restart: unless-stopped

container_name: grok_exporter_afp_reminders

image: grok_exporter

build: ./prometheus/grok_exporter/

#ports:

# - "9147:9144"

volumes:

- ./prometheus/grok_exporter/config_afp_reminders.yml:/grok/config.yml

- /var/log/:/grok/log/

networks:

- caltech-curation-network

hostname: grok_exporter_afp_reminders

grok_exporter_afp_digests:

restart: unless-stopped

container_name: grok_exporter_afp_digests

image: grok_exporter

build: ./prometheus/grok_exporter/

#ports:

# - "9148:9144"

volumes:

- ./prometheus/grok_exporter/config_afp_weekly_digests.yml:/grok/config.yml

- /var/log/:/grok/log/

networks:

- caltech-curation-network

hostname: grok_exporter_afp_digests

grok_exporter_vfp:

restart: unless-stopped

container_name: grok_exporter_vfp

image: grok_exporter

build: ./prometheus/grok_exporter/

#ports:

# - "9146:9144"

volumes:

- ./prometheus/grok_exporter/config_vfp.yml:/grok/config.yml

- /var/log/:/grok/log/

networks:

- caltech-curation-network

hostname: grok_exporter_vfp

reverse_proxy:

build:

context: .

dockerfile: reverse_proxy/Dockerfile

restart: unless-stopped

container_name: reverse_proxy

volumes:

- "${VOLUMES_DIR}/certbot/conf/:/etc/letsencrypt"

- "${VOLUMES_DIR}/certbot/www/:/var/www/html/"

networks:

- caltech-curation-network

hostname: reverse_proxy

ports:

- "443:443"

- "80:80"

environment:

ENV_STATE: "${ENV_STATE}"

networks:

caltech-curation-network:

name: caltech-curation-network

volumes:

grafana_storage:

curation_db_storage: