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541 lines (497 loc) · 18.2 KB
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//
// Non-Degree Granting Education License -- for use at non-degree
// granting, nonprofit, education, and research organizations only. Not
// for commercial or industrial use.
//
// callReflectivity.cpp
//
// Code generation for function 'callReflectivity'
//
// Include files
#include "callReflectivity.h"
#include "abelesParallelPoints.h"
#include "abelesSingle.h"
#include "colon.h"
#include "dataResolutionPolly.h"
#include "resolutionPolly.h"
#include "rt_nonfinite.h"
#include "coder_array.h"
#include <cmath>
// Function Definitions
namespace RAT
{
void b_callReflectivity(real_T bulkIns, real_T bulkOuts, const real_T
simLimits[2], const real_T repeatLayers[2], const ::coder::array<real_T, 2U>
&thisData, ::coder::array<real_T, 2U> &layers, real_T ssubs, real_T
resolution, boolean_T useImaginary, ::coder::array<real_T, 2U> &reflectivity,
::coder::array<real_T, 2U> &simulation)
{
::coder::array<creal_T, 1U> slds;
::coder::array<real_T, 2U> firstSection;
::coder::array<real_T, 2U> lastSection;
::coder::array<real_T, 1U> r;
::coder::array<real_T, 1U> roughs;
::coder::array<real_T, 1U> simRef;
::coder::array<real_T, 1U> simResolData;
::coder::array<real_T, 1U> simXdata;
::coder::array<real_T, 1U> thicks;
real_T b;
real_T nLayersTot;
real_T nRepeats;
real_T step;
int32_T i;
int32_T i1;
int32_T loop_ub;
int32_T loop_ub_tmp;
uint32_T layerCount;
uint32_T splits_idx_1;
if (repeatLayers[0] != 0.0) {
nRepeats = repeatLayers[1];
} else {
nRepeats = 1.0;
}
// Build the input arrays for thick, sld and rough.....
if (layers.size(0) == 0) {
// No layers defined. Make a zeros dummy zero layer
layers.set_size(1, 3);
layers[0] = 0.0;
layers[layers.size(0)] = bulkIns;
layers[layers.size(0) * 2] = 0.0;
}
// Number of layers (including repeats)
nLayersTot = static_cast<real_T>(layers.size(0)) * nRepeats + 2.0;
// Make arrays for thick, sld, rough
loop_ub_tmp = static_cast<int32_T>(nLayersTot);
thicks.set_size(loop_ub_tmp);
roughs.set_size(loop_ub_tmp);
for (i = 0; i < loop_ub_tmp; i++) {
thicks[i] = 0.0;
roughs[i] = 0.0;
}
if (useImaginary) {
slds.set_size(loop_ub_tmp);
for (i = 0; i < loop_ub_tmp; i++) {
slds[i].re = 0.0;
slds[i].im = 0.0;
}
} else {
slds.set_size(loop_ub_tmp);
for (i = 0; i < loop_ub_tmp; i++) {
slds[i].re = 0.0;
slds[i].im = 0.0;
}
}
// Populate the d,rho,sig arrays...
layerCount = 2U;
i = static_cast<int32_T>(nRepeats);
for (int32_T m{0}; m < i; m++) {
i1 = layers.size(0);
for (int32_T n{0}; n < i1; n++) {
if (!useImaginary) {
loop_ub_tmp = static_cast<int32_T>(layerCount + static_cast<uint32_T>
(n)) - 1;
thicks[loop_ub_tmp] = layers[n];
slds[loop_ub_tmp].re = layers[n + layers.size(0)];
slds[loop_ub_tmp].im = 0.0;
roughs[loop_ub_tmp] = layers[n + layers.size(0) * 2];
} else {
loop_ub_tmp = static_cast<int32_T>(layerCount + static_cast<uint32_T>
(n)) - 1;
thicks[loop_ub_tmp] = layers[n];
slds[loop_ub_tmp].re = layers[n + layers.size(0)];
slds[loop_ub_tmp].im = layers[n + layers.size(0) * 2];
roughs[loop_ub_tmp] = layers[n + layers.size(0) * 3];
}
}
layerCount += static_cast<uint32_T>(layers.size(0));
}
// Add the air and substrate parameters
slds[0].re = bulkIns;
slds[0].im = 0.0;
slds[slds.size(0) - 1].re = bulkOuts;
slds[slds.size(0) - 1].im = 0.0;
roughs[roughs.size(0) - 1] = ssubs;
if (simLimits[0] < thisData[0]) {
step = thisData[1] - thisData[0];
b = thisData[0] - step;
if (std::isnan(step) || std::isnan(b)) {
firstSection.set_size(1, 1);
firstSection[0] = rtNaN;
} else if ((step == 0.0) || ((simLimits[0] < b) && (step < 0.0)) || ((b <
simLimits[0]) && (step > 0.0))) {
firstSection.set_size(1, 0);
} else if ((std::isinf(simLimits[0]) || std::isinf(b)) && (std::isinf(step)
|| (simLimits[0] == b))) {
firstSection.set_size(1, 1);
firstSection[0] = rtNaN;
} else if (std::isinf(step)) {
firstSection.set_size(1, 1);
firstSection[0] = simLimits[0];
} else if ((std::floor(simLimits[0]) == simLimits[0]) && (std::floor(step)
== step)) {
loop_ub = static_cast<int32_T>((b - simLimits[0]) / step);
firstSection.set_size(1, loop_ub + 1);
for (i = 0; i <= loop_ub; i++) {
firstSection[i] = simLimits[0] + step * static_cast<real_T>(i);
}
} else {
coder::eml_float_colon(simLimits[0], step, b, firstSection);
}
} else {
firstSection.set_size(1, 0);
}
if (simLimits[1] > thisData[thisData.size(0) - 1]) {
step = thisData[thisData.size(0) - 1] - thisData[thisData.size(0) - 2];
b = thisData[thisData.size(0) - 1] + step;
if (std::isnan(b) || std::isnan(step)) {
lastSection.set_size(1, 1);
lastSection[0] = rtNaN;
} else if ((step == 0.0) || ((b < simLimits[1]) && (step < 0.0)) ||
((simLimits[1] < b) && (step > 0.0))) {
lastSection.set_size(1, 0);
} else if ((std::isinf(b) || std::isinf(simLimits[1])) && (std::isinf(step)
|| (b == simLimits[1]))) {
lastSection.set_size(1, 1);
lastSection[0] = rtNaN;
} else if (std::isinf(step)) {
lastSection.set_size(1, 1);
lastSection[0] = b;
} else if ((std::floor(b) == b) && (std::floor(step) == step)) {
loop_ub = static_cast<int32_T>((simLimits[1] - b) / step);
lastSection.set_size(1, loop_ub + 1);
for (i = 0; i <= loop_ub; i++) {
lastSection[i] = b + step * static_cast<real_T>(i);
}
} else {
coder::eml_float_colon(b, step, simLimits[1], lastSection);
}
} else {
lastSection.set_size(1, 0);
}
loop_ub_tmp = firstSection.size(1);
simXdata.set_size((thisData.size(0) + firstSection.size(1)) +
lastSection.size(1));
loop_ub = firstSection.size(1);
for (i = 0; i < loop_ub; i++) {
simXdata[i] = firstSection[i];
}
loop_ub = thisData.size(0);
for (i = 0; i < loop_ub; i++) {
simXdata[i + loop_ub_tmp] = thisData[i];
}
loop_ub = lastSection.size(1);
for (i = 0; i < loop_ub; i++) {
simXdata[(i + loop_ub_tmp) + thisData.size(0)] = lastSection[i];
}
splits_idx_1 = static_cast<uint32_T>(firstSection.size(1)) +
static_cast<uint32_T>(thisData.size(0));
simulation.set_size(simXdata.size(0), 2);
loop_ub = simXdata.size(0);
for (i = 0; i < 2; i++) {
for (i1 = 0; i1 < loop_ub; i1++) {
simulation[i1 + simulation.size(0) * i] = 0.0;
}
}
loop_ub = simXdata.size(0);
for (i = 0; i < loop_ub; i++) {
simulation[i] = simXdata[i];
}
// If we are using data resolutions, then we also need to adjust the length
// of the reolution column. We do thit by just extending with the rosolution
// values at the ends of the curve.
simResolData.set_size(1);
simResolData[0] = 0.0;
if (resolution == -1.0) {
loop_ub_tmp = firstSection.size(1);
simResolData.set_size((thisData.size(0) + firstSection.size(1)) +
lastSection.size(1));
loop_ub = firstSection.size(1);
for (i = 0; i < loop_ub; i++) {
simResolData[i] = thisData[thisData.size(0) * 3];
}
loop_ub = thisData.size(0);
for (i = 0; i < loop_ub; i++) {
simResolData[i + loop_ub_tmp] = thisData[i + thisData.size(0) * 3];
}
loop_ub = lastSection.size(1);
for (i = 0; i < loop_ub; i++) {
simResolData[(i + loop_ub_tmp) + thisData.size(0)] = thisData
[(thisData.size(0) + thisData.size(0) * 3) - 1];
}
}
// Parallelise over points
// Calculate reflectivity....
abelesParallelPoints(simXdata, nLayersTot, thicks, slds, roughs, simRef);
// Apply resolution
// Note: paraPoints gives an error during valifation, so use
// single cored resolution as a workaround for now.
if (resolution == -1.0) {
// simRef = dataResolutionPollyParallelPoints(simXdata,simRef,simResolData,length(simXdata));
dataResolutionPolly(simXdata, simRef, simResolData, static_cast<real_T>
(simXdata.size(0)), r);
loop_ub = r.size(0);
for (i = 0; i < loop_ub; i++) {
simulation[i + simulation.size(0)] = r[i];
}
} else {
// simRef = resolutionPollyParallelPoints(simXdata,simRef,res,length(simXdata));
resolutionPolly(simXdata, simRef, resolution, static_cast<real_T>
(simXdata.size(0)), r);
loop_ub = r.size(0);
for (i = 0; i < loop_ub; i++) {
simulation[i + simulation.size(0)] = r[i];
}
}
if (static_cast<uint32_T>(firstSection.size(1)) + 1U > splits_idx_1) {
i = 0;
i1 = 0;
} else {
i = firstSection.size(1);
i1 = static_cast<int32_T>(splits_idx_1);
}
loop_ub = i1 - i;
reflectivity.set_size(loop_ub, 2);
for (i1 = 0; i1 < 2; i1++) {
for (loop_ub_tmp = 0; loop_ub_tmp < loop_ub; loop_ub_tmp++) {
reflectivity[loop_ub_tmp + reflectivity.size(0) * i1] = simulation[(i +
loop_ub_tmp) + simulation.size(0) * i1];
}
}
}
void callReflectivity(real_T bulkIns, real_T bulkOuts, const real_T simLimits
[2], const real_T repeatLayers[2], const ::coder::array<
real_T, 2U> &thisData, ::coder::array<real_T, 2U>
&layers, real_T ssubs, real_T resolution, boolean_T
useImaginary, ::coder::array<real_T, 2U> &reflectivity, ::
coder::array<real_T, 2U> &simulation)
{
::coder::array<creal_T, 1U> slds;
::coder::array<real_T, 2U> firstSection;
::coder::array<real_T, 2U> lastSection;
::coder::array<real_T, 1U> r;
::coder::array<real_T, 1U> roughs;
::coder::array<real_T, 1U> simRef;
::coder::array<real_T, 1U> simResolData;
::coder::array<real_T, 1U> simXdata;
::coder::array<real_T, 1U> thicks;
real_T b;
real_T nLayersTot;
real_T nRepeats;
real_T step;
int32_T i;
int32_T i1;
int32_T loop_ub;
int32_T loop_ub_tmp;
uint32_T layerCount;
uint32_T splits_idx_1;
if (repeatLayers[0] != 0.0) {
nRepeats = repeatLayers[1];
} else {
nRepeats = 1.0;
}
// Build the input arrays for thick, sld and rough.....
if (layers.size(0) == 0) {
// No layers defined. Make a zeros dummy zero layer
layers.set_size(1, 3);
layers[0] = 0.0;
layers[layers.size(0)] = bulkIns;
layers[layers.size(0) * 2] = 0.0;
}
// Number of layers (including repeats)
nLayersTot = static_cast<real_T>(layers.size(0)) * nRepeats + 2.0;
// Make arrays for thick, sld, rough
loop_ub_tmp = static_cast<int32_T>(nLayersTot);
thicks.set_size(loop_ub_tmp);
roughs.set_size(loop_ub_tmp);
for (i = 0; i < loop_ub_tmp; i++) {
thicks[i] = 0.0;
roughs[i] = 0.0;
}
if (useImaginary) {
slds.set_size(loop_ub_tmp);
for (i = 0; i < loop_ub_tmp; i++) {
slds[i].re = 0.0;
slds[i].im = 0.0;
}
} else {
slds.set_size(loop_ub_tmp);
for (i = 0; i < loop_ub_tmp; i++) {
slds[i].re = 0.0;
slds[i].im = 0.0;
}
}
// Populate the d,rho,sig arrays...
layerCount = 2U;
i = static_cast<int32_T>(nRepeats);
for (int32_T m{0}; m < i; m++) {
i1 = layers.size(0);
for (int32_T n{0}; n < i1; n++) {
if (!useImaginary) {
loop_ub_tmp = static_cast<int32_T>(layerCount + static_cast<uint32_T>
(n)) - 1;
thicks[loop_ub_tmp] = layers[n];
slds[loop_ub_tmp].re = layers[n + layers.size(0)];
slds[loop_ub_tmp].im = 0.0;
roughs[loop_ub_tmp] = layers[n + layers.size(0) * 2];
} else {
loop_ub_tmp = static_cast<int32_T>(layerCount + static_cast<uint32_T>
(n)) - 1;
thicks[loop_ub_tmp] = layers[n];
slds[loop_ub_tmp].re = layers[n + layers.size(0)];
slds[loop_ub_tmp].im = layers[n + layers.size(0) * 2];
roughs[loop_ub_tmp] = layers[n + layers.size(0) * 3];
}
}
layerCount += static_cast<uint32_T>(layers.size(0));
}
// Add the air and substrate parameters
slds[0].re = bulkIns;
slds[0].im = 0.0;
slds[slds.size(0) - 1].re = bulkOuts;
slds[slds.size(0) - 1].im = 0.0;
roughs[roughs.size(0) - 1] = ssubs;
if (simLimits[0] < thisData[0]) {
step = thisData[1] - thisData[0];
b = thisData[0] - step;
if (std::isnan(step) || std::isnan(b)) {
firstSection.set_size(1, 1);
firstSection[0] = rtNaN;
} else if ((step == 0.0) || ((simLimits[0] < b) && (step < 0.0)) || ((b <
simLimits[0]) && (step > 0.0))) {
firstSection.set_size(1, 0);
} else if ((std::isinf(simLimits[0]) || std::isinf(b)) && (std::isinf(step)
|| (simLimits[0] == b))) {
firstSection.set_size(1, 1);
firstSection[0] = rtNaN;
} else if (std::isinf(step)) {
firstSection.set_size(1, 1);
firstSection[0] = simLimits[0];
} else if ((std::floor(simLimits[0]) == simLimits[0]) && (std::floor(step)
== step)) {
loop_ub = static_cast<int32_T>((b - simLimits[0]) / step);
firstSection.set_size(1, loop_ub + 1);
for (i = 0; i <= loop_ub; i++) {
firstSection[i] = simLimits[0] + step * static_cast<real_T>(i);
}
} else {
coder::eml_float_colon(simLimits[0], step, b, firstSection);
}
} else {
firstSection.set_size(1, 0);
}
if (simLimits[1] > thisData[thisData.size(0) - 1]) {
step = thisData[thisData.size(0) - 1] - thisData[thisData.size(0) - 2];
b = thisData[thisData.size(0) - 1] + step;
if (std::isnan(b) || std::isnan(step)) {
lastSection.set_size(1, 1);
lastSection[0] = rtNaN;
} else if ((step == 0.0) || ((b < simLimits[1]) && (step < 0.0)) ||
((simLimits[1] < b) && (step > 0.0))) {
lastSection.set_size(1, 0);
} else if ((std::isinf(b) || std::isinf(simLimits[1])) && (std::isinf(step)
|| (b == simLimits[1]))) {
lastSection.set_size(1, 1);
lastSection[0] = rtNaN;
} else if (std::isinf(step)) {
lastSection.set_size(1, 1);
lastSection[0] = b;
} else if ((std::floor(b) == b) && (std::floor(step) == step)) {
loop_ub = static_cast<int32_T>((simLimits[1] - b) / step);
lastSection.set_size(1, loop_ub + 1);
for (i = 0; i <= loop_ub; i++) {
lastSection[i] = b + step * static_cast<real_T>(i);
}
} else {
coder::eml_float_colon(b, step, simLimits[1], lastSection);
}
} else {
lastSection.set_size(1, 0);
}
loop_ub_tmp = firstSection.size(1);
simXdata.set_size((thisData.size(0) + firstSection.size(1)) +
lastSection.size(1));
loop_ub = firstSection.size(1);
for (i = 0; i < loop_ub; i++) {
simXdata[i] = firstSection[i];
}
loop_ub = thisData.size(0);
for (i = 0; i < loop_ub; i++) {
simXdata[i + loop_ub_tmp] = thisData[i];
}
loop_ub = lastSection.size(1);
for (i = 0; i < loop_ub; i++) {
simXdata[(i + loop_ub_tmp) + thisData.size(0)] = lastSection[i];
}
splits_idx_1 = static_cast<uint32_T>(firstSection.size(1)) +
static_cast<uint32_T>(thisData.size(0));
simulation.set_size(simXdata.size(0), 2);
loop_ub = simXdata.size(0);
for (i = 0; i < 2; i++) {
for (i1 = 0; i1 < loop_ub; i1++) {
simulation[i1 + simulation.size(0) * i] = 0.0;
}
}
loop_ub = simXdata.size(0);
for (i = 0; i < loop_ub; i++) {
simulation[i] = simXdata[i];
}
// If we are using data resolutions, then we also need to adjust the length
// of the reolution column. We do thit by just extending with the rosolution
// values at the ends of the curve.
simResolData.set_size(1);
simResolData[0] = 0.0;
if (resolution == -1.0) {
loop_ub_tmp = firstSection.size(1);
simResolData.set_size((thisData.size(0) + firstSection.size(1)) +
lastSection.size(1));
loop_ub = firstSection.size(1);
for (i = 0; i < loop_ub; i++) {
simResolData[i] = thisData[thisData.size(0) * 3];
}
loop_ub = thisData.size(0);
for (i = 0; i < loop_ub; i++) {
simResolData[i + loop_ub_tmp] = thisData[i + thisData.size(0) * 3];
}
loop_ub = lastSection.size(1);
for (i = 0; i < loop_ub; i++) {
simResolData[(i + loop_ub_tmp) + thisData.size(0)] = thisData
[(thisData.size(0) + thisData.size(0) * 3) - 1];
}
}
// Single cored over points
// Calculate reflectivity.....
abelesSingle(simXdata, nLayersTot, thicks, slds, roughs, simRef);
// Apply resolution correction...
if (resolution == -1.0) {
dataResolutionPolly(simXdata, simRef, simResolData, static_cast<real_T>
(simXdata.size(0)), r);
loop_ub = r.size(0);
for (i = 0; i < loop_ub; i++) {
simulation[i + simulation.size(0)] = r[i];
}
} else {
resolutionPolly(simXdata, simRef, resolution, static_cast<real_T>
(simXdata.size(0)), r);
loop_ub = r.size(0);
for (i = 0; i < loop_ub; i++) {
simulation[i + simulation.size(0)] = r[i];
}
}
if (static_cast<uint32_T>(firstSection.size(1)) + 1U > splits_idx_1) {
i = 0;
i1 = 0;
} else {
i = firstSection.size(1);
i1 = static_cast<int32_T>(splits_idx_1);
}
loop_ub = i1 - i;
reflectivity.set_size(loop_ub, 2);
for (i1 = 0; i1 < 2; i1++) {
for (loop_ub_tmp = 0; loop_ub_tmp < loop_ub; loop_ub_tmp++) {
reflectivity[loop_ub_tmp + reflectivity.size(0) * i1] = simulation[(i +
loop_ub_tmp) + simulation.size(0) * i1];
}
}
}
}
// End of code generation (callReflectivity.cpp)
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