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Copy pathmodels.py
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1930 lines (1521 loc) · 88.9 KB
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from __future__ import (absolute_import, division, print_function)
from odm2api.base import modelBase
from sqlalchemy import BigInteger, Boolean, Column, Date, DateTime, Float, ForeignKey, Integer, String, case
from sqlalchemy.dialects import mysql, postgresql, sqlite
from sqlalchemy.orm import relationship
Base = modelBase.Base
BigIntegerType = BigInteger()
BigIntegerType = BigIntegerType.with_variant(sqlite.INTEGER(), 'sqlite')
BigIntegerType = BigIntegerType.with_variant(postgresql.BIGINT(), 'postgresql')
BigIntegerType = BigIntegerType.with_variant(mysql.BIGINT(), 'mysql')
DateTimeType = DateTime()
DateTimeType = DateTimeType.with_variant(sqlite.DATETIME(), 'sqlite')
def is_hex(s):
try:
int(s, base=16)
return True
except ValueError:
return False
################################################################################
# CV
################################################################################
class CV(object):
__table_args__ = {u'schema': 'odm2'}
Term = Column('term', String(255), nullable=False)
Name = Column('name', String(255), primary_key=True)
Definition = Column('definition', String(1000))
Category = Column('category', String(255))
SourceVocabularyURI = Column('sourcevocabularyuri', String(255))
class CVActionType(Base, CV):
__tablename__ = 'cv_actiontype'
class CVAggregationStatistic(Base, CV):
__tablename__ = 'cv_aggregationstatistic'
class CVAnnotationType(Base, CV):
__tablename__ = 'cv_annotationtype'
class CVCensorCode(Base, CV):
__tablename__ = 'cv_censorcode'
class CVDataQualityType(Base, CV):
__tablename__ = 'cv_dataqualitytype'
class CVDataSetType(Base, CV):
__tablename__ = 'cv_datasettypecv'
class CVDeploymentType(Base, CV):
__tablename__ = 'cv_deploymenttype'
class CVDirectiveType(Base, CV):
__tablename__ = 'cv_directivetype'
class CVElevationDatum(Base, CV):
__tablename__ = 'cv_elevationdatum'
class CVEquipmentType(Base, CV):
__tablename__ = 'cv_equipmenttype'
class CVMediumType(Base, CV):
__tablename__ = 'cv_medium'
class CVMethodType(Base, CV):
__tablename__ = 'cv_methodtype'
class CVOrganizationType(Base, CV):
__tablename__ = 'cv_organizationtype'
class CVPropertyDataType(Base, CV):
__tablename__ = 'cv_propertydatatype'
class CVQualityCode(Base, CV):
__tablename__ = 'cv_qualitycode'
class CVResultType(Base, CV):
__tablename__ = 'cv_resulttype'
class CVRelationshipType(Base, CV):
__tablename__ = 'cv_relationshiptype'
class CVSamplingFeatureGeoType(Base, CV):
__tablename__ = 'cv_samplingfeaturegeotype'
class CVSamplingFeatureType(Base, CV):
__tablename__ = 'cv_samplingfeaturetype'
class CVSpatialOffsetType(Base, CV):
__tablename__ = 'cv_spatialoffsettype'
class CVSpeciation(Base, CV):
__tablename__ = 'cv_speciation'
class CVSpecimenType(Base, CV):
__tablename__ = 'cv_specimentype'
class CVSiteType(Base, CV):
__tablename__ = 'cv_sitetype'
class CVStatus(Base, CV):
__tablename__ = 'cv_status'
class CVTaxonomicClassifierType(Base, CV):
__tablename__ = 'cv_taxonomicclassifiertype'
class CVUnitsType(Base, CV):
__tablename__ = 'cv_unitstype'
class CVVariableName(Base, CV):
__tablename__ = 'cv_variablename'
class CVVariableType(Base, CV):
__tablename__ = 'cv_variabletype'
class CVReferenceMaterialMedium(Base, CV):
__tablename__ = 'cv_referencematerialmedium'
# ################################################################################
# Core
# ################################################################################
class People(Base):
"""
Individuals that perform actions.
"""
PersonID = Column('personid', Integer, primary_key=True, nullable=False)
PersonFirstName = Column('personfirstname', String(255), nullable=False)
PersonMiddleName = Column('personmiddlename', String(255))
PersonLastName = Column('personlastname', String(255), nullable=False)
class Organizations(Base):
"""
A group of people.
"""
OrganizationID = Column('organizationid', Integer, primary_key=True, nullable=False)
OrganizationTypeCV = Column('organizationtypecv', ForeignKey(CVOrganizationType.Name), nullable=False,
index=True)
OrganizationCode = Column('organizationcode', String(50), nullable=False)
OrganizationName = Column('organizationname', String(255), nullable=False)
OrganizationDescription = Column('organizationdescription', String(500))
OrganizationLink = Column('organizationlink', String(255))
ParentOrganizationID = Column('parentorganizationid', ForeignKey('odm2.organizations.organizationid'))
OrganizationObj = relationship(u'Organizations', remote_side=[OrganizationID])
class Affiliations(Base):
AffiliationID = Column('affiliationid', Integer, primary_key=True, nullable=False)
PersonID = Column('personid', ForeignKey(People.PersonID), nullable=False)
OrganizationID = Column('organizationid', ForeignKey(Organizations.OrganizationID))
IsPrimaryOrganizationContact = Column('isprimaryorganizationcontact', Boolean)
AffiliationStartDate = Column('affiliationstartdate', Date, nullable=False)
AffiliationEndDate = Column('affiliationenddate', Date)
PrimaryPhone = Column('primaryphone', String(50))
PrimaryEmail = Column('primaryemail', String(255), nullable=False)
PrimaryAddress = Column('primaryaddress', String(255))
PersonLink = Column('personlink', String(255))
OrganizationObj = relationship(Organizations)
PersonObj = relationship(People)
class Methods(Base):
"""
The procedure used to perform an action.
"""
MethodID = Column('methodid', Integer, primary_key=True, nullable=False)
MethodTypeCV = Column('methodtypecv', ForeignKey(CVMethodType.Name), nullable=False, index=True)
MethodCode = Column('methodcode', String(50), nullable=False)
MethodName = Column('methodname', String(255), nullable=False)
MethodDescription = Column('methoddescription', String(500))
MethodLink = Column('methodlink', String(255))
OrganizationID = Column('organizationid', Integer, ForeignKey(Organizations.OrganizationID))
OrganizationObj = relationship(Organizations)
class Actions(Base):
"""
Actions are performed by people and may have a result.
"""
ActionID = Column('actionid', Integer, primary_key=True, nullable=False)
ActionTypeCV = Column('actiontypecv', ForeignKey(CVActionType.Name), nullable=False, index=True)
MethodID = Column('methodid', ForeignKey(Methods.MethodID), nullable=False)
BeginDateTime = Column('begindatetime', DateTime, nullable=False)
BeginDateTimeUTCOffset = Column('begindatetimeutcoffset', Integer, nullable=False)
EndDateTime = Column('enddatetime', DateTime)
EndDateTimeUTCOffset = Column('enddatetimeutcoffset', Integer)
ActionDescription = Column('actiondescription', String(500))
ActionFileLink = Column('actionfilelink', String(255))
MethodObj = relationship(Methods)
class ActionBy(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ActionID = Column('actionid', Integer, ForeignKey(Actions.ActionID), nullable=False)
AffiliationID = Column('affiliationid', ForeignKey(Affiliations.AffiliationID), nullable=False)
IsActionLead = Column('isactionlead', Boolean, nullable=False)
RoleDescription = Column('roledescription', String(500))
ActionObj = relationship(Actions)
AffiliationObj = relationship(Affiliations)
class SamplingFeatures(Base):
"""
Where or on what an action was performed.
"""
SamplingFeatureID = Column('samplingfeatureid', Integer, primary_key=True, nullable=False)
"""int: Primary key identifier."""
SamplingFeatureUUID = Column('samplingfeatureuuid', String(36), nullable=False)
"""str: A universally unique identifier for the sampling feature."""
SamplingFeatureTypeCV = Column('samplingfeaturetypecv', ForeignKey(CVSamplingFeatureType.Name),
nullable=False, index=True)
"""str: CV term describing the type of sampling feature."""
SamplingFeatureCode = Column('samplingfeaturecode', String(50), nullable=False)
"""str: A short but meaningful text identifier for the sampling feature."""
SamplingFeatureName = Column('samplingfeaturename', String(255))
"""str: Sampling Feature name (free text)."""
SamplingFeatureDescription = Column('samplingfeaturedescription', String(500))
"""str: Text describing the sampling feature."""
SamplingFeatureGeotypeCV = Column('samplingfeaturegeotypecv', ForeignKey(CVSamplingFeatureGeoType.Name),
index=True)
"""str: Dimensionality of SamplingFeature; point2d, line2d, etc."""
Elevation_m = Column('elevation_m', Float(53))
"""float: The elevation of the sampling feature in meters, or in the case of Specimen,
the elevation from where the SamplingFeature.Specimen was collected""" # noqa
ElevationDatumCV = Column('elevationdatumcv', ForeignKey(CVElevationDatum.Name), index=True)
"""str: The code for the vertical geodetic datum that specifies the zero point for
the Sampling Feature Elevation""" # noqa
# FeatureGeometry = Column('featuregeometry', String(50))
"""object: The location geometry of the sampling feature on the Earth expressed using a
geometry data type. Can be a Point, Curve (profile, trajectory, etc),
Surface (flat polygons, etc) or Solid/Volume (although often limited to
2D geometries). """ # noqa
FeatureGeometryWKT = Column('featuregeometrywkt', String(50))
"""str: The location geometry of the sampling feature on the Earth expressed as
well known text (WKT). Can be a Point, Curve (profile, trajectory, etc.),
Surface (flat polygons, etc.), or Solid/Volume (although often limited to
2D geometries).""" # noqa
__mapper_args__ = {
'polymorphic_on': case(
[
(SamplingFeatureTypeCV == 'Specimen', 'Specimen'),
(SamplingFeatureTypeCV == 'Site', 'Site'),
],
else_='samplingfeatures'),
'polymorphic_identity': 'samplingfeatures',
}
class FeatureActions(Base):
"""
Provides flexible linkage between Actions and the SamplingFeatures
on which or at which they were performed.
"""
FeatureActionID = Column('featureactionid', Integer, primary_key=True, nullable=False)
SamplingFeatureID = Column('samplingfeatureid', ForeignKey(SamplingFeatures.SamplingFeatureID),
nullable=False)
ActionID = Column('actionid', ForeignKey(Actions.ActionID), nullable=False)
ActionObj = relationship(Actions)
SamplingFeatureObj = relationship(SamplingFeatures)
class DataSets(Base):
"""
Enables grouping of results into a larger dataset.
"""
DataSetID = Column('datasetid', Integer, primary_key=True, nullable=False)
# This has been changed to String to support multiple database uuid types
DataSetUUID = Column('datasetuuid', String(255), nullable=False)
DataSetTypeCV = Column('datasettypecv', ForeignKey(CVDataSetType.Name), nullable=False, index=True)
DataSetCode = Column('datasetcode', String(50), nullable=False)
DataSetTitle = Column('datasettitle', String(255), nullable=False)
DataSetAbstract = Column('datasetabstract', String(500), nullable=False)
class ProcessingLevels(Base):
"""
Levels to which data have been quality controlled.
"""
ProcessingLevelID = Column('processinglevelid', Integer, primary_key=True, nullable=False)
ProcessingLevelCode = Column('processinglevelcode', String(50), nullable=False)
Definition = Column('definition', String(500))
Explanation = Column('explanation', String(500))
class RelatedActions(Base):
"""
Enables specifying relationships among Actions (e.g., workflows, etc.)
"""
RelationID = Column('relationid', Integer, primary_key=True, nullable=False)
ActionID = Column('actionid', ForeignKey(Actions.ActionID), nullable=False)
RelationshipTypeCV = Column('relationshiptypecv', ForeignKey(CVRelationshipType.Name), nullable=False,
index=True)
RelatedActionID = Column('relatedactionid', ForeignKey(Actions.ActionID), nullable=False)
ActionObj = relationship(Actions, primaryjoin='RelatedActions.ActionID == Actions.ActionID')
RelatedActionObj = relationship(Actions, primaryjoin='RelatedActions.RelatedActionID == Actions.ActionID')
class TaxonomicClassifiers(Base):
"""
Terms for classifying results.
"""
TaxonomicClassifierID = Column('taxonomicclassifierid', Integer, primary_key=True, nullable=False)
TaxonomicClassifierTypeCV = Column(
'taxonomicclassifiertypecv',
ForeignKey(CVTaxonomicClassifierType.Name),
nullable=False,
index=True
)
TaxonomicClassifierName = Column('taxonomicclassifiername', String(255),
nullable=False)
TaxonomicClassifierCommonName = Column('taxonomicclassifiercommonname', String(255))
TaxonomicClassifierDescription = Column('taxonomicclassifierdescription', String(500))
ParentTaxonomicClassifierID = Column('parenttaxonomicclassifierid',
ForeignKey('odm2.taxonomicclassifiers.taxonomicclassifierid'))
parent = relationship(u'TaxonomicClassifiers', remote_side=[TaxonomicClassifierID])
class Units(Base):
"""
Units of measure.
"""
UnitsID = Column('unitsid', Integer, primary_key=True, nullable=False)
UnitsTypeCV = Column('unitstypecv', ForeignKey(CVUnitsType.Name), nullable=False, index=True)
UnitsAbbreviation = Column('unitsabbreviation', String(255), nullable=False)
UnitsName = Column('unitsname', String, nullable=False)
UnitsLink = Column('unitslink', String(255))
class Variables(Base):
"""
What was observed.
"""
VariableID = Column('variableid', Integer, primary_key=True, nullable=False)
VariableTypeCV = Column('variabletypecv', ForeignKey(CVVariableType.Name), nullable=False, index=True)
VariableCode = Column('variablecode', String(50), nullable=False)
VariableNameCV = Column('variablenamecv', ForeignKey(CVVariableName.Name), nullable=False, index=True)
VariableDefinition = Column('variabledefinition', String(500))
SpeciationCV = Column('speciationcv', ForeignKey(CVSpeciation.Name), index=True)
NoDataValue = Column('nodatavalue', Float(asdecimal=True), nullable=False)
class Results(Base):
"""
The result of an action.
"""
ResultID = Column('resultid', BigIntegerType, primary_key=True)
# This has been changed to String to support multiple database uuid types
# ResultUUID = Column(UNIQUEIDENTIFIER, nullable=False)
ResultUUID = Column('resultuuid', String(36), nullable=False)
FeatureActionID = Column('featureactionid', ForeignKey(FeatureActions.FeatureActionID), nullable=False)
ResultTypeCV = Column('resulttypecv', ForeignKey(CVResultType.Name), nullable=False, index=True)
VariableID = Column('variableid', ForeignKey(Variables.VariableID), nullable=False)
UnitsID = Column('unitsid', ForeignKey(Units.UnitsID), nullable=False)
TaxonomicClassifierID = Column('taxonomicclassifierid',
ForeignKey(TaxonomicClassifiers.TaxonomicClassifierID))
ProcessingLevelID = Column('processinglevelid', ForeignKey(ProcessingLevels.ProcessingLevelID),
nullable=False)
ResultDateTime = Column('resultdatetime', DateTime)
ResultDateTimeUTCOffset = Column('resultdatetimeutcoffset', BigIntegerType)
ValidDateTime = Column('validdatetime', DateTime)
ValidDateTimeUTCOffset = Column('validdatetimeutcoffset', BigIntegerType)
StatusCV = Column('statuscv', ForeignKey(CVStatus.Name), index=True)
SampledMediumCV = Column('sampledmediumcv', ForeignKey(CVMediumType.Name), nullable=False, index=True)
ValueCount = Column('valuecount', Integer, nullable=False)
FeatureActionObj = relationship(FeatureActions)
ProcessingLevelObj = relationship(ProcessingLevels)
TaxonomicClassifierObj = relationship(TaxonomicClassifiers)
UnitsObj = relationship(Units)
VariableObj = relationship(Variables)
__mapper_args__ = {
'polymorphic_on': case([
(ResultTypeCV == 'Point coverage', 'Point coverage'),
(ResultTypeCV == 'Profile Coverage', 'Profile Coverage'),
(ResultTypeCV == 'Category coverage', 'Category coverage'),
(ResultTypeCV == 'Transect Coverage', 'Transect Coverage'),
(ResultTypeCV == 'Spectra coverage', 'Spectra coverage'),
(ResultTypeCV == 'Time series coverage', 'Time series coverage'),
(ResultTypeCV == 'Section coverage', 'Section coverage'),
(ResultTypeCV == 'Profile Coverage', 'Profile Coverage'),
(ResultTypeCV == 'Trajectory coverage', 'Trajectory coverage'),
(ResultTypeCV == 'Measurement', 'Measurement'),
], else_='results'),
'polymorphic_identity': 'results',
}
# ################################################################################
# Equipment
# ################################################################################
class DataLoggerProgramFiles(Base):
ProgramID = Column('programid', Integer, primary_key=True, nullable=False)
AffiliationID = Column('affiliationid', Integer, ForeignKey(Affiliations.AffiliationID), nullable=False)
ProgramName = Column('programname', String(255), nullable=False)
ProgramDescription = Column('programdescription', String(500))
ProgramVersion = Column('programversion', String(50))
ProgramFileLink = Column('programfilelink', String(255))
AffiliationObj = relationship(Affiliations)
class DataLoggerFiles(Base):
DataLoggerFileID = Column('dataloggerfileid', Integer, primary_key=True, nullable=False)
ProgramID = Column('programid', Integer, ForeignKey(DataLoggerProgramFiles.ProgramID), nullable=False)
DataLoggerFileName = Column('dataloggerfilename', String(255), nullable=False)
DataLoggerOutputFileDescription = Column('dataloggerfiledescription', String(500))
DataLoggerOutputFileLink = Column('dataloggerfilelink', String(255))
ProgramObj = relationship(DataLoggerProgramFiles)
class EquipmentModels(Base):
ModelID = Column('equipmentmodelid', Integer, primary_key=True, nullable=False)
ModelManufacturerID = Column('modelmanufacturerid', Integer,
ForeignKey(Organizations.OrganizationID), nullable=False)
ModelPartNumber = Column('modelpartnumber', String(50))
ModelName = Column('modelname', String(255), nullable=False)
ModelDescription = Column('modeldescription', String(500))
ModelSpecificationsFileLink = Column('modelspecificationsfilelink', String(255))
ModelLink = Column('modellink', String(255))
IsInstrument = Column('isinstrument', Boolean, nullable=False)
OrganizationObj = relationship(Organizations)
class InstrumentOutputVariables(Base):
InstrumentOutputVariableID = Column(
'instrumentoutputvariableid',
Integer,
primary_key=True,
nullable=False
)
ModelID = Column('modelid', Integer, ForeignKey(EquipmentModels.ModelID), nullable=False)
VariableID = Column('variableid', Integer, ForeignKey(Variables.VariableID), nullable=False)
InstrumentMethodID = Column('instrumentmethodid', Integer, ForeignKey(Methods.MethodID), nullable=False)
InstrumentResolution = Column('instrumentresolution', String(255))
InstrumentAccuracy = Column('instrumentaccuracy', String(255))
InstrumentRawOutputUnitsID = Column('instrumentrawoutputunitsid', Integer, ForeignKey(Units.UnitsID),
nullable=False)
MethodObj = relationship(Methods)
OutputUnitObj = relationship(Units)
EquipmentModelObj = relationship(EquipmentModels)
VariableObj = relationship(Variables)
class DataLoggerFileColumns(Base):
DataLoggerFileColumnID = Column('dataloggerfilecolumnid', Integer, primary_key=True, nullable=False)
ResultID = Column('resultid', BigIntegerType, ForeignKey(Results.ResultID))
DataLoggerFileID = Column('dataloggerfileid', Integer,
ForeignKey(DataLoggerFiles.DataLoggerFileID), nullable=False)
InstrumentOutputVariableID = Column('instrumentoutputvariableid', Integer,
ForeignKey(InstrumentOutputVariables.VariableID),
nullable=False)
ColumnLabel = Column('columnlabel', String(50), nullable=False)
ColumnDescription = Column('columndescription', String(500))
MeasurementEquation = Column('measurementequation', String(255))
ScanInterval = Column('scaninterval', Float(50))
ScanIntervalUnitsID = Column('scanintervalunitsid', Integer, ForeignKey(Units.UnitsID))
RecordingInterval = Column('recordinginterval', Float(50))
RecordingIntervalUnitsID = Column('recordingintervalunitsid', Integer, ForeignKey(Units.UnitsID))
AggregationStatisticCV = Column(
'aggregationstatisticcv',
String(255),
ForeignKey(CVAggregationStatistic.Name),
index=True
)
ResultObj = relationship(Results)
DataLoggerFileObj = relationship(DataLoggerFiles)
InstrumentOutputVariableObj = relationship(InstrumentOutputVariables)
ScanIntervalUnitsObj = relationship(
Units,
primaryjoin='DataLoggerFileColumns.ScanIntervalUnitsID == Units.UnitsID'
)
RecordingIntervalUnitsObj = relationship(
Units,
primaryjoin='DataLoggerFileColumns.RecordingIntervalUnitsID == Units.UnitsID'
)
class Equipment(Base):
EquipmentID = Column('equipmentid', Integer, primary_key=True, nullable=False)
EquipmentCode = Column('equipmentcode', String(50), nullable=False)
EquipmentName = Column('equipmentname', String(255), nullable=False)
EquipmentTypeCV = Column('equipmenttypecv', ForeignKey(CVEquipmentType.Name), nullable=False, index=True)
ModelID = Column('equipmentmodelid', ForeignKey(EquipmentModels.ModelID), nullable=False)
EquipmentSerialNumber = Column('equipmentserialnumber', String(50), nullable=False)
EquipmentInventoryNumber = Column('equipmentinventorynumber', String(50))
EquipmentOwnerID = Column('equipmentownerid', ForeignKey(People.PersonID), nullable=False)
EquipmentVendorID = Column('equipmentvendorid', ForeignKey(Organizations.OrganizationID), nullable=False)
EquipmentPurchaseDate = Column('equipmentpurchasedate', DateTime, nullable=False)
EquipmentPurchaseOrderNumber = Column('equipmentpurchaseordernumber', String(50))
EquipmentDescription = Column('equipmentdescription', String(500))
EquipmentDocumentationLink = Column('equipmentdocumentationlink', String(255))
PersonObj = relationship(People)
OrganizationObj = relationship(Organizations)
EquipmentModelObj = relationship(EquipmentModels)
class CalibrationReferenceEquipment(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ActionID = Column('actionid', Integer, ForeignKey(Actions.ActionID), nullable=False)
EquipmentID = Column('equipmentid', Integer, ForeignKey(Equipment.EquipmentID), nullable=False)
ActionObj = relationship(Actions)
EquipmentObj = relationship(Equipment)
class EquipmentActions(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
EquipmentID = Column('equipmentid', ForeignKey(Equipment.EquipmentID), nullable=False)
ActionID = Column('actionid', ForeignKey(Actions.ActionID), nullable=False)
ActionObj = relationship(Actions)
EquipmentObj = relationship(Equipment)
class EquipmentUsed(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ActionID = Column('actionid', Integer, ForeignKey(Actions.ActionID), nullable=False)
EquipmentID = Column('equipmentid', Integer, ForeignKey(Equipment.EquipmentID), nullable=False)
ActionObj = relationship(Actions)
EquipmentObj = relationship(Equipment)
class MaintenanceActions(Base):
ActionID = Column('actionid', Integer, ForeignKey(Actions.ActionID), primary_key=True, nullable=False)
IsFactoryService = Column('isfactoryservice', Boolean, nullable=False)
MaintenanceCode = Column('maintenancecode', String(50))
MantenanceReason = Column('maintenancereason', String(50))
ActionObj = relationship(Actions)
class RelatedEquipment(Base):
RelationID = Column('relationid', Integer, primary_key=True, nullable=True)
EquipmentID = Column('equipmentid', Integer, ForeignKey(Equipment.EquipmentID), nullable=True)
RelationshipTypeCV = Column('relationshiptypecv', String(255), nullable=True, index=True)
RelatedEquipmentID = Column(
'relatedequipmentid',
Integer,
ForeignKey(Equipment.EquipmentID),
nullable=True
)
RelationshipStartDateTime = Column('relationshipstartdatetime', DateTime, nullable=True)
RelationshipStartDateTimeUTCOffset = Column('relationshipstartdatetimeutcoffset', Integer, nullable=True)
RelationshipEndDateTime = Column('relationshipenddatetime', DateTime)
RelationshipEndDateTimeUTCOffset = Column('relationshipenddatetimeutcoffset', Integer)
EquipmentObj = relationship(
Equipment,
primaryjoin='RelatedEquipment.EquipmentID == Equipment.EquipmentID'
)
RelatedEquipmentObj = relationship(
Equipment,
primaryjoin='RelatedEquipment.RelatedEquipmentID == Equipment.EquipmentID'
)
class CalibrationActions(Base):
ActionID = Column('actionid', Integer, ForeignKey(Actions.ActionID), primary_key=True, nullable=False)
CalibrationCheckValue = Column('calibrationcheckvalue', Float(53))
InstrumentOutputVariableID = Column('instrumentoutputvariableid', Integer,
ForeignKey(InstrumentOutputVariables.VariableID), nullable=False)
CalibrationEquation = Column('calibrationequation', String(255))
ActionObj = relationship(Actions)
InstrumentOutputVariableObj = relationship(InstrumentOutputVariables)
# ################################################################################
# Lab Analyses
# ################################################################################
class Directives(Base):
DirectiveID = Column('directiveid', Integer, primary_key=True, nullable=False)
DirectiveTypeCV = Column('directivetypecv', ForeignKey(CVDirectiveType.Name), nullable=False, index=True)
DirectiveDescription = Column('directivedescription', String(500), nullable=False)
class ActionDirectives(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ActionID = Column('actionid', ForeignKey(Actions.ActionID), nullable=False)
DirectiveID = Column('directiveid', ForeignKey(Directives.DirectiveID), nullable=False)
ActionObj = relationship(Actions)
DirectiveObj = relationship(Directives)
class SpecimenBatchPositions(Base):
# todo fix misspelling
__tablename__ = u'specimenbatchpostions'
FeatureActionID = Column(
'featureactionid',
Integer,
ForeignKey(FeatureActions.FeatureActionID),
primary_key=True,
nullable=False
)
BatchPositionsNumber = Column('batchpositionnumber', Integer, nullable=False)
BatchPositionLabel = Column('batchpositionlabel', String(255))
FeatureActionObj = relationship(FeatureActions)
# ################################################################################
# Sampling Features
# ################################################################################
class SpatialReferences(Base):
SpatialReferenceID = Column('spatialreferenceid', Integer, primary_key=True, nullable=False)
SRSCode = Column('srscode', String(50))
SRSName = Column('srsname', String(255), nullable=False)
SRSDescription = Column('srsdescription', String(500))
SRSLink = Column('srslink', String(255))
class Specimens(SamplingFeatures):
SamplingFeatureID = Column('samplingfeatureid', ForeignKey(SamplingFeatures.SamplingFeatureID),
primary_key=True)
SpecimenTypeCV = Column('specimentypecv', ForeignKey(CVSpecimenType.Name), nullable=False, index=True)
SpecimenMediumCV = Column('specimenmediumcv', ForeignKey(CVMediumType.Name), nullable=False, index=True)
IsFieldSpecimen = Column('isfieldspecimen', Boolean, nullable=False)
__mapper_args__ = {
'polymorphic_identity': 'Specimen',
}
class SpatialOffsets(Base):
SpatialOffsetID = Column('spatialoffsetid', Integer, primary_key=True, nullable=False)
SpatialOffsetTypeCV = Column('spatialoffsettypecv', ForeignKey(CVSpatialOffsetType.Name), nullable=False,
index=True)
Offset1Value = Column('offset1value', Float(53), nullable=False)
Offset1UnitID = Column('offset1unitid', Integer, ForeignKey(Units.UnitsID), nullable=False)
Offset2Value = Column('offset2value', Float(53))
Offset2UnitID = Column('offset2unitid', Integer, ForeignKey(Units.UnitsID))
Offset3Value = Column('offset3value', Float(53))
Offset3UnitID = Column('offset3unitid', Integer, ForeignKey(Units.UnitsID))
Offset1UnitObj = relationship(Units, primaryjoin='SpatialOffsets.Offset1UnitID == Units.UnitsID')
Offset2UnitObj = relationship(Units, primaryjoin='SpatialOffsets.Offset2UnitID == Units.UnitsID')
Offset3UnitObj = relationship(Units, primaryjoin='SpatialOffsets.Offset3UnitID == Units.UnitsID')
class Sites(SamplingFeatures):
SamplingFeatureID = Column('samplingfeatureid', ForeignKey(SamplingFeatures.SamplingFeatureID),
primary_key=True)
SpatialReferenceID = Column('spatialreferenceid', ForeignKey(SpatialReferences.SpatialReferenceID),
nullable=False)
SiteTypeCV = Column('sitetypecv', ForeignKey(CVSiteType.Name), nullable=False, index=True)
Latitude = Column('latitude', Float(53), nullable=False)
Longitude = Column('longitude', Float(53), nullable=False)
SpatialReferenceObj = relationship(SpatialReferences)
__mapper_args__ = {
'polymorphic_identity': 'Site',
}
class RelatedFeatures(Base):
RelationID = Column('relationid', Integer, primary_key=True, nullable=False)
SamplingFeatureID = Column('samplingfeatureid', ForeignKey(SamplingFeatures.SamplingFeatureID),
nullable=False)
RelationshipTypeCV = Column('relationshiptypecv', ForeignKey(CVRelationshipType.Name), nullable=False,
index=True)
RelatedFeatureID = Column(
'relatedfeatureid',
ForeignKey(SamplingFeatures.SamplingFeatureID),
nullable=False
)
SpatialOffsetID = Column('spatialoffsetid', ForeignKey(SpatialOffsets.SpatialOffsetID))
SamplingFeatureObj = relationship(
SamplingFeatures,
primaryjoin='RelatedFeatures.SamplingFeatureID == SamplingFeatures.SamplingFeatureID'
)
RelatedFeatureObj = relationship(
SamplingFeatures,
primaryjoin='RelatedFeatures.RelatedFeatureID == SamplingFeatures.SamplingFeatureID'
)
SpatialOffsetObj = relationship(SpatialOffsets)
class SpecimenTaxonomicClassifiers(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
SamplingFeatureID = Column('samplingfeatureid', ForeignKey(Specimens.SamplingFeatureID), nullable=False)
TaxonomicClassifierID = Column('taxonomicclassifierid',
ForeignKey(TaxonomicClassifiers.TaxonomicClassifierID), nullable=False)
CitationID = Column('citationid', Integer)
SpecimenObj = relationship(Specimens)
TaxonomicClassifierObj = relationship(TaxonomicClassifiers)
# ################################################################################
# Simulation
# ################################################################################
class Models(Base):
ModelID = Column('modelid', Integer, primary_key=True, nullable=False)
ModelCode = Column('modelcode', String(255), nullable=False)
ModelName = Column('modelname', String(255), nullable=False)
ModelDescription = Column('modeldescription', String(500))
class RelatedModels(Base):
RelatedID = Column('relatedid', Integer, primary_key=True, nullable=False)
ModelID = Column('modelid', ForeignKey(Models.ModelID), nullable=False)
RelationshipTypeCV = Column('relationshiptypecv', ForeignKey(CVRelationshipType.Name), nullable=False,
index=True)
RelatedModelID = Column('relatedmodelid', ForeignKey(Models.ModelID), nullable=False)
ModelObj = relationship(Models, primaryjoin='RelatedModels.ModelID == Models.ModelID')
RelatedModelObj = relationship(Models, primaryjoin='RelatedModels.RelatedModelID == Models.ModelID')
class Simulations(Base):
SimulationID = Column('simulationid', Integer, primary_key=True, nullable=False)
ActionID = Column('actionid', ForeignKey(Actions.ActionID), nullable=False)
SimulationName = Column('simulationname', String(255), nullable=False)
SimulationDescription = Column('simulationdescription', String(500))
SimulationStartDateTime = Column('simulationstartdatetime', Date, nullable=False)
SimulationStartDateTimeUTCOffset = Column('simulationstartdatetimeutcoffset', Integer, nullable=False)
SimulationEndDateTime = Column('simulationenddatetime', Date, nullable=False)
SimulationEndDateTimeUTCOffset = Column('simulationenddatetimeutcoffset', Integer, nullable=False)
TimeStepValue = Column('timestepvalue', Float(53), nullable=False)
TimeStepUnitsID = Column('timestepunitsid', ForeignKey(Units.UnitsID), nullable=False)
InputDataSetID = Column('inputdatasetid', ForeignKey(DataSets.DataSetID))
# OutputDataSetID = Column('outputdatasetid', Integer) # What's this ?
ModelID = Column('modelid', ForeignKey(Models.ModelID), nullable=False)
Action = relationship(Actions)
DataSet = relationship(DataSets)
Model = relationship(Models)
Unit = relationship(Units)
# Part of the Provenance table, needed here to meet dependencies
class Citations(Base):
CitationID = Column('citationid', Integer, primary_key=True, nullable=False)
Title = Column('title', String(255), nullable=False)
Publisher = Column('publisher', String(255), nullable=False)
PublicationYear = Column('publicationyear', Integer, nullable=False)
CitationLink = Column('citationlink', String(255))
# ################################################################################
# Annotations
# ################################################################################
class Annotations(Base):
AnnotationID = Column('annotationid', Integer, primary_key=True, nullable=False)
AnnotationTypeCV = Column(
'annotationtypecv',
ForeignKey(CVAnnotationType.Name),
nullable=False,
index=True
)
AnnotationCode = Column('annotationcode', String(50))
AnnotationText = Column('annotationtext', String(500), nullable=False)
AnnotationDateTime = Column('annotationdatetime', DateTime)
AnnotationUTCOffset = Column('annotationutcoffset', Integer)
AnnotationLink = Column('annotationlink', String(255))
AnnotatorID = Column('annotatorid', ForeignKey(People.PersonID))
CitationID = Column('citationid', ForeignKey(Citations.CitationID))
# PersonObj = relationship(People)
AnnotatorObj = relationship(People)
CitationObj = relationship(Citations)
class ActionAnnotations(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ActionID = Column('actionid', ForeignKey(Actions.ActionID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)
ActionObj = relationship(Actions)
AnnotationObj = relationship(Annotations)
class EquipmentAnnotations(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
EquipmentID = Column('equipmentid', BigIntegerType, ForeignKey(Equipment.EquipmentID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)
AnnotationObj = relationship(Annotations)
EquipmentObj = relationship(Equipment)
class MethodAnnotations(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
MethodID = Column('methodid', ForeignKey(Methods.MethodID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)
AnnotationObj = relationship(Annotations)
MethodObj = relationship(Methods)
class ResultAnnotations(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ResultID = Column('resultid', ForeignKey(Results.ResultID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)
BeginDateTime = Column('begindatetime', DateTime, nullable=False)
EndDateTime = Column('enddatetime', DateTime, nullable=False)
AnnotationObj = relationship(Annotations)
ResultObj = relationship(Results)
class SamplingFeatureAnnotations(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
SamplingFeatureID = Column('samplingfeatureid', ForeignKey(SamplingFeatures.SamplingFeatureID),
nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)
AnnotationObj = relationship(Annotations)
SamplingFeatureObj = relationship(SamplingFeatures)
# ################################################################################
# Data Quality
# ################################################################################
class DataSetsResults(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
DataSetID = Column('datasetid', ForeignKey(DataSets.DataSetID), nullable=False)
ResultID = Column('resultid', ForeignKey(Results.ResultID), nullable=False)
DataSetObj = relationship(DataSets)
ResultObj = relationship(Results)
class DataQuality(Base):
DataQualityID = Column('dataqualityid', Integer, primary_key=True, nullable=False)
DataQualityTypeCV = Column('dataqualitytypecv', ForeignKey(CVDataQualityType.Name), nullable=False,
index=True)
DataQualityCode = Column('dataqualitycode', String(255), nullable=False)
DataQualityValue = Column('dataqualityvalue', Float(53))
DataQualityValueUnitsID = Column('dataqualityvalueunitsid', ForeignKey(Units.UnitsID))
DataQualityDescription = Column('dataqualitydescription', String(500))
DataQualityLink = Column('dataqualitylink', String(255))
UnitObj = relationship(Units)
class ReferenceMaterials(Base):
ReferenceMaterialID = Column('referencematerialid', Integer, primary_key=True, nullable=False)
ReferenceMaterialMediumCV = Column(
'referencematerialmediumcv',
ForeignKey(CVReferenceMaterialMedium.Name),
nullable=False,
index=True
)
ReferenceMaterialOrganizationID = Column('referencematerialorganizationid',
ForeignKey(Organizations.OrganizationID), nullable=False)
ReferenceMaterialCode = Column('referencematerialcode', String(50), nullable=False)
ReferenceMaterialLotCode = Column('referencemateriallotcode', String(255))
ReferenceMaterialPurchaseDate = Column('referencematerialpurchasedate', DateTime)
ReferenceMaterialExpirationDate = Column('referencematerialexpirationdate', DateTime)
ReferenceMaterialCertificateLink = Column('referencematerialcertificatelink', String(255))
SamplingFeatureID = Column('samplingfeatureid', ForeignKey(SamplingFeatures.SamplingFeatureID))
OrganizationObj = relationship(Organizations)
SamplingFeatureObj = relationship(SamplingFeatures)
class CalibrationStandards(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ActionID = Column('actionid', Integer, ForeignKey(Actions.ActionID), nullable=False)
ReferenceMaterialID = Column(
'referencematerialid',
Integer,
ForeignKey(ReferenceMaterials.ReferenceMaterialID),
nullable=False
)
ActionObj = relationship(Actions)
ReferenceMaterialObj = relationship(ReferenceMaterials)
class ReferenceMaterialValues(Base):
ReferenceMaterialValueID = Column('referencematerialvalueid', Integer, primary_key=True, nullable=False)
ReferenceMaterialID = Column('referencematerialid', ForeignKey(ReferenceMaterials.ReferenceMaterialID),
nullable=False)
ReferenceMaterialValue = Column('referencematerialvalue', Float(53), nullable=False)
ReferenceMaterialAccuracy = Column('referencematerialaccuracy', Float(53))
VariableID = Column('variableid', ForeignKey(Variables.VariableID), nullable=False)
UnitsID = Column('unitsid', ForeignKey(Units.UnitsID), nullable=False)
CitationID = Column('citationid', ForeignKey(Citations.CitationID), nullable=False)
CitationObj = relationship(Citations)
ReferenceMaterialObj = relationship(ReferenceMaterials)
UnitObj = relationship(Units)
VariableObj = relationship(Variables)
class ResultNormalizationValues(Base):
ResultID = Column(u'resultid', ForeignKey(Results.ResultID), primary_key=True)
ReferenceMaterialValueID = Column(u'normalizedbyreferencematerialvalueid',
ForeignKey(ReferenceMaterialValues.ReferenceMaterialValueID),
nullable=False)
ResultsObj = relationship(Results)
ReferenceMaterialValueObj = relationship(ReferenceMaterialValues)
class ResultsDataQuality(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ResultID = Column('resultid', ForeignKey(Results.ResultID), nullable=False)
DataQualityID = Column('dataqualityid', ForeignKey(DataQuality.DataQualityID), nullable=False)
DataQualityObj = relationship(DataQuality)
ResultObj = relationship(Results)
# ################################################################################
# Extension Properties
# ################################################################################
class ExtensionProperties(Base):
PropertyID = Column('propertyid', Integer, primary_key=True, nullable=False)
PropertyName = Column('propertyname', String(255), nullable=False)
PropertyDescription = Column('propertydescription', String(500))
PropertyDataTypeCV = Column('propertydatatypecv', ForeignKey(CVPropertyDataType.Name), nullable=False,
index=True)
PropertyUnitsID = Column('propertyunitsid', ForeignKey(Units.UnitsID))
UnitObj = relationship(Units)
class ActionExtensionPropertyValues(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ActionID = Column('actionid', ForeignKey(Actions.ActionID), nullable=False)
PropertyID = Column('propertyid', ForeignKey(ExtensionProperties.PropertyID), nullable=False)
PropertyValue = Column('propertyvalue', String(255), nullable=False)
ActionObj = relationship(Actions)
ExtensionPropertyObj = relationship(ExtensionProperties)
class CitationExtensionPropertyValues(Base):
BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
CitationID = Column('citationid', ForeignKey(Citations.CitationID), nullable=False)
PropertyID = Column('propertyid', ForeignKey(ExtensionProperties.PropertyID), nullable=False)
PropertyValue = Column('propertyvalue', String(255), nullable=False)
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