FROM node:18 as jsbuild

ENV FOLDER=netpyne

WORKDIR $FOLDER/webapp

COPY webapp/package.json .

COPY webapp/yarn.lock .

RUN yarn install --network-timeout 1000000000

COPY webapp .

RUN yarn build-dev

FROM jupyter/base-notebook:hub-1.5.0 as downloads

USER root

RUN wget --no-check-certificate -O /nyhead.mat https://www.parralab.org/nyhead/sa_nyhead.mat

FROM jupyter/base-notebook:hub-1.5.0

ENV NB_UID=jovyan

ENV FOLDER=netpyne

ENV NP_LFPYKIT_HEAD_FILE=/home/jovyan/nyhead.mat

USER root

RUN rm -rf /var/lib/apt/lists

RUN apt-get update -qq &&\

apt-get install python3-tk vim nano unzip git make libtool g++ -qq pkg-config libfreetype6-dev libpng-dev libopenmpi-dev -y

RUN apt-get install openjdk-11-jre-headless -y

RUN conda install python=3.7 -y

WORKDIR $FOLDER

COPY --chown=1000:1000 requirements.txt requirements.txt

RUN --mount=type=cache,target=/root/.cache python -m pip install --upgrade pip &&\

pip install -r requirements.txt --prefer-binary

RUN rm -f ~/.jupyter/*.json

RUN chown $NB_UID .

RUN chown $NB_UID /opt

RUN rm -Rf workspace

RUN mkdir -p /opt/workspace

RUN mkdir -p /opt/user

COPY netpyne_ui netpyne_ui

COPY utilities utilities

COPY setup.py .

COPY tests tests

COPY NetPyNE-UI .

COPY README.rst .

COPY requirements-test.txt .

USER $NB_UID

ENV NEURON_HOME=/opt/conda

USER root

RUN jupyter nbextension install --py --symlink --sys-prefix jupyter_geppetto

RUN jupyter nbextension enable --py --sys-prefix jupyter_geppetto

RUN jupyter nbextension enable --py --sys-prefix widgetsnbextension

RUN jupyter serverextension enable --py --sys-prefix jupyter_geppetto

ARG BUILD_ARGS=""

ARG WORKSPACE_VERSION=master

RUN --mount=type=cache,target=/root/.cache python -m pip install --upgrade pip &&\

python utilities/install.py ${BUILD_ARGS} --workspace $WORKSPACE_VERSION --npm-skip

RUN mv workspace /opt/workspace/tutorials

RUN chown -R $NB_UID /opt/workspace

RUN ln -s /opt/workspace workspace

RUN jupyter labextension disable @jupyterlab/hub-extension

COPY --from=downloads --chown=1000:1000 /nyhead.mat $NP_LFPYKIT_HEAD_FILE

COPY --from=jsbuild --chown=1000:1000 $FOLDER/webapp/build webapp/build

RUN chown -R $NB_UID /home/jovyan/.jupyter

RUN touch app.log && chown $NB_UID app.log

USER $NB_UID

EXPOSE 8888

ENTRYPOINT ["tini", "-g", "--"]

CMD ./NetPyNE-UI