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752 lines (730 loc) · 18.2 KB
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import { WidgetStatus } from '@metacell/geppetto-meta-client/common/layout/model';
export const MINIMIZED_PANEL = 'border_bottom';
export { WidgetStatus };
export const TOP_PANEL = 'hlsPanel';
export const TOOLS_LIST = 'tools';
export const DEFAULT_CONFIRMATION_DIALOG_MESSAGE = 'A NetPyNE model has already been instantiated or simulated.'
+ ' Continuing with this action will use the old value of netParams and simConfig for the new model. Do you want to continue?';
export const THEMES = {
DARK: 'gui',
BLACK: 'guiBlack',
LIGHT: 'guiWhite',
};
export const MODEL_STATE = {
NOT_INSTANTIATED: 'NOT_INSTANTIATED',
INSTANTIATED: 'INSTANTIATED',
SIMULATED: 'SIMULATED',
};
export const DEFAULT_COLOR = {
g: 0.50, b: 0.60, r: 1, a: 1,
};
export const NETPYNE_COMMANDS = {
instantiateModel: 'netpyne_geppetto.instantiateNetPyNEModelInGeppetto',
simulateModel: 'netpyne_geppetto.simulateNetPyNEModelInGeppetto',
importModel: 'netpyne_geppetto.importModel',
exportModel: 'netpyne_geppetto.exportModel',
saveModel: 'netpyne_geppetto.saveToIndexFile',
exportHLS: 'netpyne_geppetto.exportHLS',
plotFigure: 'netpyne_geppetto.getPlot',
deleteParam: 'netpyne_geppetto.deleteParam',
checkAvailablePlots: 'netpyne_geppetto.checkAvailablePlots',
getExperiments: 'netpyne_geppetto.experiments.get_experiments',
cloneExperiment: 'netpyne_geppetto.cloneExperiment',
viewExperimentResults: 'netpyne_geppetto.viewExperimentResult',
importNeuroML: 'netpyne_geppetto.importNeuroML',
importLEMS: 'netpyne_geppetto.importLEMS',
};
export const REAL_TYPE = {
INT: 'int',
FLOAT: 'float',
BOOL: 'bool',
STR: 'str',
FUNC: 'func',
DICT: 'dict',
DICT_DICT: 'dict(dict)',
};
export const PYTHON_CONSOLE_WIDGET = {
id: 'python',
name: 'Python',
status: WidgetStatus.MINIMIZED,
component: 'PythonConsole',
panelName: MINIMIZED_PANEL,
defaultWeight: 30,
defaultPosition: 'BOTTOM',
defaultPanel: 'consolePanel',
enableClose: true,
enableDrag: true,
enableRename: false,
hideOnClose: true,
pos: 1000,
specification: TOOLS_LIST,
};
/*
* ------------------------------------------------------------------------------ //
* ------------------------------------------------------------------------------ //
*/
export const TOPBAR_CONSTANTS = {
LOAD: 'LOAD',
LOAD_INDEX: 'LOAD_INDEX',
LOAD_INDEX_WORKSPACE: 'LOAD_INDEX_WORKSPACE',
SAVE_INDEX_WORKSPACE: 'SAVE_INDEX_WORKSPACE',
SAVE: 'SAVE',
IMPORT_HLS: 'IMPORT_HLS',
EXPORT_HLS: 'EXPORT_HLS',
IMPORT_CELL_TEMPLATE: 'IMPORT_CELL_TEMPLATE',
NEW_MODEL: 'NEW_MODEL',
UPLOAD_FILES: 'UPLOAD_FILES',
DOWNLOAD_FILES: 'DOWNLOAD_FILES',
CREATE_NETWORK: 'Create network',
CREATE_AND_SIMULATE_NETWORK: 'Create and simulate network',
SIMULATE: 'Simulate network',
EXPLORE_EXISTING_NETWORK: 'Explore model',
BACK_TO_EDITION: 'BACK TO EDIT',
NEW_PAGE: 'NEW_PAGE',
NETWORK_MODEL: 'NETWORK_MODEL',
IMPORT_NEUROML: 'IMPORT_NEUROML',
IMPORT_LEMS: 'IMPORT_LEMS',
};
/*
* ------------------------------------------------------------------------------ //
* ------------------------------------------------------------------------------ //
*/
export const NETWORK_PLOT_WIDGETS = {
connectionPlot: {
id: 'connectionPlot',
name: 'Connections Plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
enableRename: false,
hideOnClose: true,
initialized: false,
pos: 1,
config: {
id: 'connectionPlot',
name: 'Connections Plot',
method: {
plotKey: 'plotConn',
plotMethod: 'iplotConn',
plotType: false,
},
},
},
d2NetPlot: {
id: 'd2NetPlot',
name: '2D Net Plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
enableRename: false,
hideOnClose: true,
initialized: false,
pos: 2,
config: {
id: 'd2NetPlot',
name: '2D Net Plot',
method: {
plotKey: 'plot2Dnet',
plotMethod: 'iplot2Dnet',
plotType: false,
},
},
},
};
export const PLOT_WIDGETS = {
...NETWORK_PLOT_WIDGETS,
tracesPlot: {
id: 'tracesPlot',
name: 'Cell traces',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
hideOnClose: true,
enableRename: false,
initialized: false,
disabled: true,
pos: 3,
config: {
id: 'tracesPlot',
name: 'Cell traces',
method: {
plotKey: 'plotTraces',
plotMethod: 'iplotTraces',
plotType: false,
},
},
},
rasterPlot: {
id: 'rasterPlot',
name: 'Raster plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
enableRename: false,
hideOnClose: true,
initialized: false,
disabled: true,
pos: 4,
config: {
id: 'rasterPlot',
name: 'Raster plot',
method: {
plotKey: 'plotRaster',
plotMethod: 'iplotRaster',
plotType: false,
},
},
},
spikePlot: {
id: 'spikePlot',
name: 'Spike Hist Plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
enableRename: false,
hideOnClose: true,
initialized: false,
disabled: true,
pos: 5,
config: {
id: 'spikePlot',
name: 'Spike Hist Plot',
method: {
plotKey: 'plotSpikeHist',
plotMethod: 'iplotSpikeHist',
plotType: false,
},
pos: 5,
},
},
spikeStatsPlot: {
id: 'spikeStatsPlot',
name: 'Spike Stats Plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
hideOnClose: true,
enableRename: false,
initialized: false,
disabled: true,
pos: 6,
config: {
id: 'spikeStatsPlot',
name: 'Spike Stats Plot',
method: {
key: 'plotSpikeStats',
plotMethod: 'iplotSpikeStats',
plotType: false,
},
},
},
ratePSDPlot: {
id: 'ratePSDPlot',
name: 'Rate PSD Plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
enableRename: false,
hideOnClose: true,
initialized: false,
disabled: true,
method: {
key: 'plotRatePSD',
plotMethod: 'iplotRatePSD',
plotType: false,
},
pos: 7,
config: {
id: 'ratePSDPlot',
name: 'Rate PSD Plot',
method: {
key: 'plotRatePSD',
plotMethod: 'iplotRatePSD',
plotType: false,
},
},
},
LFPTimeSeriesPlot: {
id: 'LFPTimeSeriesPlot',
name: 'LFP Time Series Plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
enableRename: false,
hideOnClose: true,
initialized: false,
disabled: true,
method: {
plotKey: 'plotLFP',
plotMethod: 'iplotLFP',
plotType: 'timeSeries',
},
pos: 8,
config: {
id: 'LFPTimeSeriesPlot',
name: 'LFP Time Series Plot',
method: {
plotKey: 'plotLFP',
plotMethod: 'iplotLFP',
plotType: 'timeSeries',
},
},
},
LFPPSDPlot: {
id: 'LFPPSDPlot',
name: 'LFP PSD Plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
hideOnClose: true,
enableRename: false,
initialized: false,
disabled: true,
method: {
plotKey: 'plotLFP',
plotMethod: 'iplotLFP',
plotType: 'PSD',
},
pos: 9,
config: {
id: 'LFPPSDPlot',
name: 'LFP PSD Plot',
method: {
plotKey: 'plotLFP',
plotMethod: 'iplotLFP',
plotType: 'PSD',
},
},
},
LFPSpectrogramPlot: {
id: 'LFPSpectrogramPlot',
name: 'LFP Spectrogram Plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
enableRename: false,
hideOnClose: true,
initialized: false,
disabled: true,
method: {
plotKey: 'plotLFP',
plotMethod: 'iplotLFP',
plotType: 'spectrogram',
},
pos: 10,
config: {
id: 'LFPSpectrogramPlot',
name: 'LFP Spectrogram Plot',
method: {
plotKey: 'plotLFP',
plotMethod: 'iplotLFP',
plotType: 'spectrogram',
},
},
},
grangerPlot: {
id: 'grangerPlot',
name: 'Granger Plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
hideOnClose: true,
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
enableRename: false,
initialized: false,
disabled: true,
method: {
plotKey: 'granger',
plotMethod: 'granger',
plotType: false,
},
pos: 11,
config: {
id: 'grangerPlot',
name: 'Granger Plot',
method: {
plotKey: 'granger',
plotMethod: 'granger',
plotType: false,
},
},
},
rxdConcentrationPlot: {
id: 'rxdConcentrationPlot',
name: 'RxD concentration plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
hideOnClose: true,
enableRename: false,
initialized: false,
disabled: true,
method: {
plotKey: 'plotRxDConcentration',
plotMethod: 'iplotRxDConcentration',
plotType: false,
},
pos: 12,
config: {
id: 'rxdConcentrationPlot',
name: 'RxD concentration plot',
method: {
plotKey: 'plotRxDConcentration',
plotMethod: 'iplotRxDConcentration',
plotType: false,
},
},
},
plotDipole: {
id: 'plotDipole',
name: 'Dipole plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
hideOnClose: true,
enableRename: false,
initialized: false,
disabled: true,
method: {
plotKey: 'plotDipole',
plotMethod: 'plotDipole',
plotType: false,
},
pos: 13,
config: {
id: 'plotDipole',
name: 'Dipole plot',
uri: 'downloads?uri=workspace/{name}',
method: {
plotKey: 'plotDipole',
plotMethod: 'plotDipole',
plotType: false,
},
},
},
plotEEG: {
id: 'plotEEG',
name: 'EEG plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
hideOnClose: true,
enableRename: false,
initialized: false,
disabled: true,
method: {
plotKey: 'plotEEG',
plotMethod: 'plotEEG',
plotType: false,
},
pos: 14,
config: {
id: 'plotEEG',
name: 'EEG plot',
uri: 'downloads?uri=workspace/{name}',
method: {
plotKey: 'plotEEG',
plotMethod: 'plotEEG',
plotType: false,
},
},
},
plotRateSpectrogram: {
id: 'plotRateSpectrogram',
name: 'Rate Spectrogram Plot',
status: WidgetStatus.MINIMIZED,
component: 'Plot',
hideOnClose: true,
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
enableRename: false,
initialized: false,
disabled: true,
method: {
plotKey: 'plotRateSpectrogram',
plotMethod: 'plotRateSpectrogram',
plotType: false,
},
pos: 15,
config: {
id: 'plotRateSpectrogram',
name: 'Rate Spectrogram Plot',
method: {
plotKey: 'plotRateSpectrogram',
plotMethod: 'plotRateSpectrogram',
plotType: false,
},
},
},
};
export const DEFAULT_NETWORK_WIDGETS = {
D3Canvas: {
id: 'D3Canvas',
name: '3D Representation',
status: WidgetStatus.ACTIVE,
component: 'D3Canvas',
panelName: 'morphoPanel',
enableRename: false,
hideOnClose: true,
pos: 0,
},
experimentManager: {
id: 'experimentManager',
name: 'Experiment Manager',
status: WidgetStatus.MINIMIZED,
hideOnClose: true,
component: 'experimentManager',
panelName: MINIMIZED_PANEL,
defaultPanel: TOP_PANEL,
enableRename: false,
pos: 17,
specification: TOOLS_LIST,
},
experimentControlPanel: {
id: 'experimentControlPanel',
name: 'Control Panel',
status: WidgetStatus.MINIMIZED,
hideOnClose: true,
component: 'experimentControlPanel',
panelName: MINIMIZED_PANEL,
defaultPanel: 'plotPanel',
enableRename: false,
pos: 16,
specification: TOOLS_LIST,
},
...PLOT_WIDGETS,
[PYTHON_CONSOLE_WIDGET.id]: PYTHON_CONSOLE_WIDGET,
};
export const EDIT_WIDGETS = {
[PYTHON_CONSOLE_WIDGET.id]: PYTHON_CONSOLE_WIDGET,
cellParams: {
id: 'cellParams',
name: 'Cell Types',
model: 'netParams.cellParams',
status: WidgetStatus.ACTIVE,
component: 'cellParams',
panelName: TOP_PANEL,
enableRename: false,
hideOnClose: true,
pos: 0,
props: {
model: 'netParams.cellParams',
},
},
popParams: {
id: 'popParams',
name: 'Populations',
model: 'netParams.popParams',
status: WidgetStatus.HIDDEN,
component: 'popParams',
panelName: TOP_PANEL,
enableRename: false,
hideOnClose: true,
pos: 1,
props: {
model: 'netParams.popParams',
},
},
synMechParams: {
id: 'synMechParams',
name: 'Synaptic Mechanisms',
model: 'netParams.synMechParams',
status: WidgetStatus.HIDDEN,
component: 'synMechParams',
panelName: TOP_PANEL,
enableRename: false,
hideOnClose: true,
pos: 2,
props: {
model: 'netParams.synMechParams',
},
},
connParams: {
id: 'connParams',
name: 'Connectivity Rules',
model: 'netParams.connParams',
status: WidgetStatus.HIDDEN,
component: 'connParams',
panelName: TOP_PANEL,
hideOnClose: true,
enableRename: false,
pos: 3,
props: {
model: 'netParams.connParams',
},
},
subConnParams: {
id: 'subConnParams',
name: 'Sub-cellular Connectivity Rules',
model: 'netParams.subConnParams',
status: WidgetStatus.HIDDEN,
component: 'subConnParams',
panelName: TOP_PANEL,
hideOnClose: true,
enableRename: false,
pos: 4,
props: {
model: 'netParams.subConnParams',
},
},
stimSourceParams: {
id: 'stimSourceParams',
name: 'Stim. sources',
model: 'netParams.stimSourceParams',
status: WidgetStatus.HIDDEN,
component: 'stimSourceParams',
hideOnClose: true,
panelName: TOP_PANEL,
enableRename: false,
pos: 5,
props: {
model: 'netParams.stimSourceParams',
},
},
stimTargetParams: {
id: 'stimTargetParams',
name: 'Stim. targets',
model: 'netParams.stimTargetParams',
status: WidgetStatus.HIDDEN,
component: 'stimTargetParams',
hideOnClose: true,
panelName: TOP_PANEL,
enableRename: false,
pos: 6,
props: {
model: 'netParams.stimTargetParams',
},
},
rxd: {
id: 'rxd',
name: 'Reaction-Diffusion',
model: 'netParams.rxdParams',
status: WidgetStatus.HIDDEN,
hideOnClose: true,
component: 'rxd',
panelName: TOP_PANEL,
enableRename: false,
pos: 7,
props: {
model: 'netParams.rxdParams',
},
},
analysis: {
id: 'analysis',
name: 'Plot Settings',
model: 'simConfig.analysis',
status: WidgetStatus.HIDDEN,
hideOnClose: true,
component: 'analysis',
panelName: TOP_PANEL,
enableRename: false,
pos: 8,
props: {
model: 'simConfig.analysis',
},
},
simConfig: {
id: 'simConfig',
name: 'Configuration',
status: WidgetStatus.HIDDEN,
component: 'simConfig',
hideOnClose: true,
panelName: TOP_PANEL,
enableRename: false,
pos: 9,
},
experimentManager: {
id: 'experimentManager',
name: 'Experiment Manager',
status: WidgetStatus.HIDDEN,
hideOnClose: true,
component: 'experimentManager',
panelName: TOP_PANEL,
enableRename: false,
pos: 10,
specification: TOOLS_LIST,
},
};
export const EXPERIMENT_STATE = {
DESIGN: 'DESIGN',
PENDING: 'PENDING',
SIMULATING: 'SIMULATING',
SIMULATED: 'SIMULATED',
INSTANTIATING: 'INSTANTIATING',
INSTANTIATED: 'INSTANTIATED',
ERROR: 'ERROR',
};
export const SIDEBAR_HEADINGS = {
MODEL: 'Model Specification',
TOOLS: 'Tools',
PLOTS: 'Plots',
};
export const EXPERIMENT_TEXTS = {
WARNING: 'Warning: You need at least two parameters for the grouping to work.',
RANGE: 'range',
LIST: 'list',
CREATE_EXPERIMENT: 'Create New Experiment',
DIALOG_MESSAGE: 'The new experiment will replace the current experiment in design, are you sure you want to proceed?',
INPUT_ERR_MESSAGE: 'Please check the input',
DELETE_EXPERIMENT: 'Delete Experiment',
DELETE_DIALOG_MESSAGE: 'Are you sure you want to delete this experiment?',
CLONE_EXPERIMENT: 'Clone Experiment',
CLONE_EXPERIMENT_MESSAGE: 'Replaces the Experiment in design with the stored Experiment.',
VIEW_EXPERIMENTS_RESULTS: 'View simulation results',
VIEW_EXPERIMENTS_RESULTS_MESSAGE: 'This will replace the currently loaded results in Explore, '
+ 'are you sure you want to proceed?',
LOAD_TRIAL_MODEL_SPEC: 'Load Model Specification',
LOAD_TRIAL_MODEL_SPEC_MESSAGE: 'This will replace the currently loaded model specification, '
+ 'are you sure you want to proceed?',
ERROR_EXPERIMENT_WITH_NAME_EXISTS: 'This name is already taken',
ERROR_EXPERIMENT_EMPTY: 'Please enter experiment name',
};
export const TUTORIALS_LIST = {
tut1: 'Tut 1: Simple cell network',
tut2: 'Tut 2: Detailed cell network',
tut3: 'Tut 3a: Multiscale network (low IP3)',
tut3_ip3high: 'Tut 3b: Multiscale network (high IP3)',
tut3_norxd: 'Tut 3c: Multiscale network (no RxD)',
tut_osc: 'Tut 4: Simple oscillatory network',
};
export const EXPERIMENT_VIEWS = {
list: 'list',
viewExperiment: 'viewExperiment',
jsonViewer: 'jsonViewer',
edit: 'edit',
};
export const LAUNCH_MODAL = {
title: 'What do you want to simulate ?',
modelState: 'model',
experimentState: 'experiment',
actionSimulate: 'Simulate',
defaultResource: 'Server',
errorText: 'Please check the input',
};
export const geometryClasses = [
'DistributedBoundary',
'FractionalVolume',
'FixedCrossSection',
'ScalableBorder',
'Shell',
];
export const geometryStrings = [
'inside',
'membrane',
];
export const KERNEL_HANDLING = {
tmpModelPath: '/tmp/tmpmodel',
};
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