We develop open-source software for MS-based proteomics, driven by teams at the Max Planck Institute of Biochemistry and the Centre for Proteomics Research (Copenhagen).
Our aim is to provide flexible and future-proof tools for proteomics that span the full data analysis pipeline - from efficient access to raw MS data, through peptide and protein identification and quantification, to biological interpretation and multi-omics integration. We pursue this through:
- Open science: all software is released under permissive open-source licenses
- Reproducibility and scientific quality: performant, well-tested, and well-documented methods
- Accessibility: clear APIs, tutorials, and contribution guidelines
- Community collaboration: tools designed to be extensible and interoperable
Learn more at https://alphapept.org or reach out on GitHub!