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1. Commits on Sep 19, 2026

   • Correct bundled pathway interactions and separate network edge curves

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2. Commits on Aug 14, 2026

   • docs: publish paper and update maintainer

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3. Commits on Aug 11, 2026

   • docs: index MALDI matrix annotation functions

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   • ci: cache and verify vignette downloads

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   • feat: add matrix-aware metabolite annotation

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   • feat: add SMINT-compatible spatial alignment

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   • docs: add RaMP 3.0 annotation pipeline vignette

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   • ci: cache Mouse Brain data and avoid streaming RDS files

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4. Commits on Aug 10, 2026

   • docs: deploy vignette assets and refresh pathway network

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   • fix: update legacy FOV objects before cropping

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   • ci: split pkgdown vignette builds and update DHB Seurat object

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   • fix: handle empty marker tables in mouse brain vignette

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   • fix: use Seurat v5 layer access in spatial analysis

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   • docs: add developmental documentation link

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   • fixation of Pathway graph and gh page

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5. Commits on Aug 7, 2026

   • Update RaMP 3.0.7 and metabolite annotation engine

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6. Commits on Jan 20, 2026

   • update tutorial

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   • Update README.md

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   • Update publication scripts

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7. Commits on Jan 19, 2026

   • update publication scripts

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8. Commits on Jan 17, 2026

   • update github

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   • update github

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   • update vignette

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   • update vignette

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   • update vignette

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   • update title

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   • update vignette

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   • update vignette

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9. Commits on Jan 16, 2026

   • update load script

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   • fix loading code

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   • update

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   • update

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   • Merge branch 'main' of github.com:GenomicsMachineLearning/SpaMTP

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   • Update vignettes and pkgdown workflow

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   • update scripts

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