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Commits on Sep 30, 2022

• Merge pull request #1040 from sashashura/patch-1

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• Merge pull request #1036 from aegugup/fix-local-align-score-vector

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  josemduarte

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Commits on Sep 24, 2022

• build: harden pull_request.yml permissions

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  sashashura

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• build: harden master.yml permissions

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Commits on Jul 26, 2022

• Test local, linear scheme alignment

  

  aegugup

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• Fix pointers[y] is null error

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  aegugup

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• Fix pointers[y] is null error

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Commits on Jul 11, 2022

• Merge pull request #1029 from marty-rabens/prevent-XXE-processing

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• Merge pull request #1034 from jamesmorris/master

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Commits on Jul 6, 2022

• Added test for issue #886

  

  jamesmorris

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• Fixed issue #886 by escaping percent symbols when feature attributes are

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Commits on Jun 23, 2022

• Merge branch 'biojava:master' into prevent-XXE-processing

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Commits on Jun 21, 2022

• Merge pull request #1030 from JonStargaryen/master

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• Merge pull request #1031 from JonStargaryen/assembly-cif

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Commits on Jun 20, 2022

• update assembly file test to new location

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• ciftools-java-jdk8@4.0.2

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• Prevent XXE processing in XMLHelper

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Commits on Apr 27, 2022

• Merge pull request #1027 from heuermh/update-guava

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Commits on Apr 3, 2022

• Update guava dependency version to 31.1-jre.

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Commits on Feb 25, 2022

• Merge pull request #1023 from zedomel/master

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Commits on Feb 15, 2022

• Merge pull request #1 from zedomel/issue929

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  zedomel

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• Fix NullPointerException

  zedomel

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Commits on Feb 1, 2022

• Updating changelog

  josemduarte

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• [maven-release-plugin] prepare for next development iteration

  josemduarte

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• [maven-release-plugin] prepare release biojava-6.0.5

  josemduarte

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• Removing a utility tool that was really internal to biojava, but that was using external resources that are now gone.

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• Merge pull request #1020 from josemduarte/handle_null_pdbids

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• Make sure there's no ambiguity in constructor to call

  josemduarte

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• More readable

  josemduarte

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Commits on Jan 31, 2022

• Handling some nulls in PdbId creation, #1019

  josemduarte

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Commits on Jan 5, 2022

• Updating after release

  josemduarte

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• [maven-release-plugin] prepare for next development iteration

  josemduarte

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• [maven-release-plugin] prepare release biojava-6.0.4

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• Merge pull request #1012 from richarda23/fix-ontology-demo

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• Merge pull request #998 from richarda23/#944-testcoverage

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