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1. Commits on Oct 12, 2026

   • Update and simplify.

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   • Simplify.

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   • Merge remote-tracking branch 'origin/master'

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   • Fix directory location.

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2. Commits on Oct 9, 2026

   • Fix formatting

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   • Merge remote-tracking branch 'origin/master'

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   • Fix for het_vals.

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3. Commits on Oct 8, 2026

   • Fix types/formatting

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   • Add acceptance test

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4. Commits on Oct 7, 2026

   • Fix type.

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   • Fix style.

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   • Fix style.

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   • Remove unused parameter.

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5. Commits on Jul 12, 2026

   • Merge pull request #359 from BiomedicalMachineLearning/newmana/fix_plotting_colours

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   • Fix style

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   • Keep colours - if user supplies to few - add them - used to remove all user colours and regenerate always.

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   • Merge pull request #358 from BiomedicalMachineLearning/newmana/fix_loading_lrs

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   • Use more modern approach to loading included databases and fix mouse loading creating duplicates.

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   • Merge remote-tracking branch 'origin/master'

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   • Fix manifest and pyproject - cleanup script clause and use manifest to include files.

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6. Commits on Jun 26, 2026

   • Merge pull request #354 from BiomedicalMachineLearning/newmana/fix_paths

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   • Support using xe-outs (experimental) and finding the required files in subdirectories.

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7. Commits on Jun 25, 2026

   • Reformat.

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   • Fix tests due to changing API/data type warning.

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   • Add tests for infinity psueodotime/disconnected graphs. Remove knn as part of pseudotime and just check.

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   • Update to latest tutorial build.

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8. Commits on Jun 16, 2026

   • Merge pull request #352 from BiomedicalMachineLearning/newmana/issue_350

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   • Fix formatting.

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   • Document change.

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   • More data type fixes and improve speed of generating random pairs.

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   • Upgrade pillow.

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   • Upgrade to 1.4.1.

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   • Fix up types, docstring and add tests for issues #350 and #300.

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   • Fix formatting and type.

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   • Start to tidy up types.

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